Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 PLK5-205ENST00000642079 1969 ntBASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 AC135050.7-201ENST00000624508 2218 ntBASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 AC004448.1-201ENST00000458332 883 ntBASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 AL391005.1-201ENST00000623953 2435 ntBASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
CCDC28AQ8IWP9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 BEX3-202ENST00000372634 753 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.77■□□□□ 0.28
CCDC28AQ8IWP9 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.77■□□□□ 0.27
CCDC28AQ8IWP9 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 KRT18P24-201ENST00000344739 1156 ntBASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 AC120024.1-201ENST00000562672 995 ntBASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 LINC01960-201ENST00000563759 1884 ntBASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CCDC28AQ8IWP9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
CCDC28AQ8IWP9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms