Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 KRT18P29-201ENST00000397031 1267 ntBASIC23.33■■□□□ 1.33
KRT40Q6A162 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
KRT40Q6A162 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.33■■□□□ 1.32
KRT40Q6A162 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.33■■□□□ 1.32
KRT40Q6A162 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC23.33■■□□□ 1.32
KRT40Q6A162 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
KRT40Q6A162 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.33■■□□□ 1.32
KRT40Q6A162 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
KRT40Q6A162 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.33■■□□□ 1.32
KRT40Q6A162 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
KRT40Q6A162 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.33■■□□□ 1.32
KRT40Q6A162 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.33■■□□□ 1.32
KRT40Q6A162 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.32■■□□□ 1.32
KRT40Q6A162 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.32■■□□□ 1.32
KRT40Q6A162 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
KRT40Q6A162 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 KRT18P68-201ENST00000392293 1000 ntBASIC23.32■■□□□ 1.32
KRT40Q6A162 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC23.32■■□□□ 1.32
KRT40Q6A162 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
KRT40Q6A162 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC23.32■■□□□ 1.32
KRT40Q6A162 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.32■■□□□ 1.32
KRT40Q6A162 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC23.32■■□□□ 1.32
KRT40Q6A162 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
KRT40Q6A162 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.31■■□□□ 1.32
KRT40Q6A162 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 AC105020.6-201ENST00000621523 1217 ntBASIC23.31■■□□□ 1.32
KRT40Q6A162 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC23.31■■□□□ 1.32
KRT40Q6A162 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
KRT40Q6A162 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT40Q6A162 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT40Q6A162 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT40Q6A162 ME2-218ENST00000640965 2476 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT40Q6A162 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.3■■□□□ 1.32
KRT40Q6A162 AL512625.2-201ENST00000417533 625 ntBASIC23.3■■□□□ 1.32
KRT40Q6A162 RNA5SP413-201ENST00000516373 109 ntBASIC23.3■■□□□ 1.32
KRT40Q6A162 AC105036.2-201ENST00000569468 176 ntBASIC23.3■■□□□ 1.32
KRT40Q6A162 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.3■■□□□ 1.32
KRT40Q6A162 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC23.3■■□□□ 1.32
KRT40Q6A162 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC23.3■■□□□ 1.32
KRT40Q6A162 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
KRT40Q6A162 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KRT40Q6A162 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
KRT40Q6A162 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.29■■□□□ 1.32
KRT40Q6A162 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 AF201337.1-201ENST00000520239 748 ntBASIC23.29■■□□□ 1.32
KRT40Q6A162 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
KRT40Q6A162 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC23.29■■□□□ 1.32
KRT40Q6A162 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
KRT40Q6A162 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC23.28■■□□□ 1.32
KRT40Q6A162 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC23.28■■□□□ 1.32
KRT40Q6A162 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.28■■□□□ 1.32
KRT40Q6A162 AC133552.2-202ENST00000575694 574 ntBASIC23.28■■□□□ 1.32
KRT40Q6A162 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.28■■□□□ 1.32
KRT40Q6A162 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC23.28■■□□□ 1.32
KRT40Q6A162 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.28■■□□□ 1.32
KRT40Q6A162 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
KRT40Q6A162 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.27■■□□□ 1.32
KRT40Q6A162 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.27■■□□□ 1.32
KRT40Q6A162 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.27■■□□□ 1.32
KRT40Q6A162 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
KRT40Q6A162 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
KRT40Q6A162 AC073210.2-201ENST00000430369 194 ntBASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms