Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 GCSHP5-201ENST00000443090 522 ntBASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 RNA5SP413-201ENST00000516373 109 ntBASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 IRX5-204ENST00000560154 879 ntTSL 5 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 MAZ-216ENST00000616501 991 ntTSL 5 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PDLIM3Q53GG5 AC011484.1-201ENST00000377652 1995 ntBASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 DUX4L16-201ENST00000555130 1264 ntBASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 AC231657.2-201ENST00000624556 255 ntBASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDLIM3Q53GG5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 AC005181.1-201ENST00000604782 1256 ntBASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC16.59■□□□□ 0.25
PDLIM3Q53GG5 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
PDLIM3Q53GG5 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms