Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.18■■□□□ 1.3
SF3A1Q15459 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.18■■□□□ 1.3
SF3A1Q15459 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
SF3A1Q15459 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
SF3A1Q15459 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
SF3A1Q15459 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC23.18■■□□□ 1.3
SF3A1Q15459 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.18■■□□□ 1.3
SF3A1Q15459 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
SF3A1Q15459 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
SF3A1Q15459 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC23.17■■□□□ 1.3
SF3A1Q15459 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 BID-204ENST00000399767 2129 ntTSL 2 BASIC23.17■■□□□ 1.3
SF3A1Q15459 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
SF3A1Q15459 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC23.17■■□□□ 1.3
SF3A1Q15459 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
SF3A1Q15459 AC007322.4-201ENST00000509611 723 ntBASIC23.17■■□□□ 1.3
SF3A1Q15459 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC23.17■■□□□ 1.3
SF3A1Q15459 AC013268.1-206ENST00000638368 961 ntBASIC23.17■■□□□ 1.3
SF3A1Q15459 AC112229.1-201ENST00000639295 961 ntBASIC23.17■■□□□ 1.3
SF3A1Q15459 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.17■■□□□ 1.3
SF3A1Q15459 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.17■■□□□ 1.3
SF3A1Q15459 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
SF3A1Q15459 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
SF3A1Q15459 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.17■■□□□ 1.3
SF3A1Q15459 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
SF3A1Q15459 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
SF3A1Q15459 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
SF3A1Q15459 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.16■■□□□ 1.3
SF3A1Q15459 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.16■■□□□ 1.3
SF3A1Q15459 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 AC016769.1-201ENST00000409132 1010 ntBASIC23.16■■□□□ 1.3
SF3A1Q15459 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.16■■□□□ 1.3
SF3A1Q15459 AC011767.1-201ENST00000617410 1153 ntBASIC23.16■■□□□ 1.3
SF3A1Q15459 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
SF3A1Q15459 DPP3P2-201ENST00000416030 1696 ntBASIC23.16■■□□□ 1.3
SF3A1Q15459 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC23.15■■□□□ 1.3
SF3A1Q15459 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 ME3-201ENST00000323418 1068 ntTSL 5 BASIC23.15■■□□□ 1.3
SF3A1Q15459 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
SF3A1Q15459 AC006015.1-201ENST00000429970 570 ntBASIC23.15■■□□□ 1.3
SF3A1Q15459 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.15■■□□□ 1.3
SF3A1Q15459 DUX4L16-201ENST00000555130 1264 ntBASIC23.15■■□□□ 1.3
SF3A1Q15459 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC23.15■■□□□ 1.3
SF3A1Q15459 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.15■■□□□ 1.3
SF3A1Q15459 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.15■■□□□ 1.3
SF3A1Q15459 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 TCF3P1-201ENST00000423021 1937 ntBASIC23.15■■□□□ 1.3
SF3A1Q15459 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.15■■□□□ 1.3
SF3A1Q15459 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.15■■□□□ 1.3
SF3A1Q15459 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SF3A1Q15459 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC23.14■■□□□ 1.3
SF3A1Q15459 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC23.14■■□□□ 1.3
SF3A1Q15459 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.14■■□□□ 1.3
SF3A1Q15459 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
SF3A1Q15459 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.14■■□□□ 1.29
SF3A1Q15459 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 CYP21A1P-202ENST00000354927 1481 ntBASIC23.14■■□□□ 1.29
SF3A1Q15459 CNN2P6-201ENST00000439038 900 ntBASIC23.14■■□□□ 1.29
SF3A1Q15459 AL162430.1-201ENST00000480705 870 ntBASIC23.14■■□□□ 1.29
SF3A1Q15459 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.14■■□□□ 1.29
SF3A1Q15459 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
SF3A1Q15459 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC23.14■■□□□ 1.29
SF3A1Q15459 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.14■■□□□ 1.29
SF3A1Q15459 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
SF3A1Q15459 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SF3A1Q15459 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.13■■□□□ 1.29
SF3A1Q15459 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
SF3A1Q15459 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
SF3A1Q15459 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC23.13■■□□□ 1.29
SF3A1Q15459 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC23.13■■□□□ 1.29
SF3A1Q15459 AL162412.1-201ENST00000567129 965 ntBASIC23.13■■□□□ 1.29
SF3A1Q15459 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.13■■□□□ 1.29
SF3A1Q15459 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms