Protein–RNA interactions for Protein: Q00578

SSL2, General transcription and DNA repair factor IIH helicase subunit XPB, yeastyeast

Predictions only

Length 843 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSL2Q00578 SEC16YPL085W 6588 nt2.31□□□□□ -2.04
SSL2Q00578 SSD1YDR293C 3753 nt2.31□□□□□ -2.04
SSL2Q00578 YOR394C-AYOR394C-A 168 nt2.3□□□□□ -2.04
SSL2Q00578 BUB1YGR188C 3066 nt2.3□□□□□ -2.04
SSL2Q00578 CDC60YPL160W 3273 nt2.29□□□□□ -2.04
SSL2Q00578 YPP1YGR198W 2454 nt2.29□□□□□ -2.04
SSL2Q00578 YGR164WYGR164W 336 nt2.29□□□□□ -2.04
SSL2Q00578 IRR1YIL026C 3453 nt2.29□□□□□ -2.04
SSL2Q00578 RAV1YJR033C 4074 nt2.29□□□□□ -2.04
SSL2Q00578 GIP3YPL137C 3831 nt2.29□□□□□ -2.04
SSL2Q00578 SNF5YBR289W 2718 nt2.28□□□□□ -2.04
SSL2Q00578 NIP100YPL174C 2607 nt2.28□□□□□ -2.04
SSL2Q00578 RTT101YJL047C 2529 nt2.28□□□□□ -2.04
SSL2Q00578 CRM1YGR218W 3255 nt2.28□□□□□ -2.04
SSL2Q00578 YLR154W-AYLR154W-A 186 nt2.28□□□□□ -2.04
SSL2Q00578 RFX1YLR176C 2436 nt2.28□□□□□ -2.04
SSL2Q00578 RPB10YOR210W 213 nt2.27□□□□□ -2.05
SSL2Q00578 SET2YJL168C 2202 nt2.27□□□□□ -2.05
SSL2Q00578 SPC98YNL126W 2541 nt2.27□□□□□ -2.05
SSL2Q00578 UBR1YGR184C 5853 nt2.26□□□□□ -2.05
SSL2Q00578 LRE1YCL051W 1752 nt2.26□□□□□ -2.05
SSL2Q00578 TRL1YJL087C 2484 nt2.26□□□□□ -2.05
SSL2Q00578 SWI6YLR182W 2412 nt2.26□□□□□ -2.05
SSL2Q00578 snR85snR85 171 nt2.26□□□□□ -2.05
SSL2Q00578 YIL020C-AYIL020C-A 339 nt2.26□□□□□ -2.05
SSL2Q00578 snR52snR52 92 nt2.26□□□□□ -2.05
SSL2Q00578 MNL2YLR057W 2550 nt2.26□□□□□ -2.05
SSL2Q00578 NEO1YIL048W 3456 nt2.26□□□□□ -2.05
SSL2Q00578 PET309YLR067C 2898 nt2.25□□□□□ -2.05
SSL2Q00578 RPS27BYHR021C 249 nt2.25□□□□□ -2.05
SSL2Q00578 YHR073W-AYHR073W-A 177 nt2.25□□□□□ -2.05
SSL2Q00578 COF1YLL050C 432 nt2.25□□□□□ -2.05
SSL2Q00578 PAU18YLL064C 363 nt2.25□□□□□ -2.05
SSL2Q00578 PAU6YNR076W 363 nt2.25□□□□□ -2.05
SSL2Q00578 SPO75YLL005C 2607 nt2.25□□□□□ -2.05
SSL2Q00578 CDC53YDL132W 2448 nt2.25□□□□□ -2.05
SSL2Q00578 TUS1YLR425W 3924 nt2.24□□□□□ -2.05
SSL2Q00578 SWI5YDR146C 2130 nt2.24□□□□□ -2.05
SSL2Q00578 ELG1YOR144C 2376 nt2.24□□□□□ -2.05
SSL2Q00578 IST2YBR086C 2841 nt2.24□□□□□ -2.05
SSL2Q00578 LYS14YDR034C 2373 nt2.24□□□□□ -2.05
SSL2Q00578 BRP1YGL007W 378 nt2.23□□□□□ -2.05
SSL2Q00578 HER1YOR227W 3741 nt2.23□□□□□ -2.05
SSL2Q00578 MMS22YLR320W 4365 nt2.22□□□□□ -2.05
SSL2Q00578 YCR043CYCR043C 384 nt2.22□□□□□ -2.05
SSL2Q00578 VTC1YER072W 390 nt2.22□□□□□ -2.05
SSL2Q00578 YHR071C-AYHR071C-A 321 nt2.22□□□□□ -2.05
SSL2Q00578 ATP7YKL016C 525 nt2.22□□□□□ -2.05
SSL2Q00578 YOR381W-AYOR381W-A 168 nt2.22□□□□□ -2.05
SSL2Q00578 SLM1YIL105C 2061 nt2.22□□□□□ -2.05
SSL2Q00578 MET18YIL128W 3099 nt2.21□□□□□ -2.06
SSL2Q00578 YOR218CYOR218C 420 nt2.21□□□□□ -2.06
SSL2Q00578 snR48snR48 113 nt2.21□□□□□ -2.06
SSL2Q00578 YCL046WYCL046W 324 nt2.21□□□□□ -2.06
SSL2Q00578 MNE1YOR350C 1992 nt2.21□□□□□ -2.06
SSL2Q00578 CUL3YGR003W 2235 nt2.21□□□□□ -2.06
SSL2Q00578 SIR4YDR227W 4077 nt2.2□□□□□ -2.06
SSL2Q00578 YDL118WYDL118W 381 nt2.2□□□□□ -2.06
SSL2Q00578 ULI1YFR026C 510 nt2.2□□□□□ -2.06
SSL2Q00578 ECM12YHR021W-A 456 nt2.2□□□□□ -2.06
SSL2Q00578 SLY1YDR189W 2001 nt2.2□□□□□ -2.06
SSL2Q00578 SPO21YOL091W 1830 nt2.19□□□□□ -2.06
SSL2Q00578 YBL012CYBL012C 402 nt2.19□□□□□ -2.06
SSL2Q00578 RGA1YOR127W 3024 nt2.18□□□□□ -2.06
SSL2Q00578 SRP14YDL092W 441 nt2.18□□□□□ -2.06
SSL2Q00578 YDR182W-AYDR182W-A 204 nt2.18□□□□□ -2.06
SSL2Q00578 YOR345CYOR345C 351 nt2.18□□□□□ -2.06
SSL2Q00578 ZRG8YER033C 3231 nt2.18□□□□□ -2.06
SSL2Q00578 NAM7YMR080C 2916 nt2.18□□□□□ -2.06
SSL2Q00578 ATG11YPR049C 3537 nt2.17□□□□□ -2.06
SSL2Q00578 VPS8YAL002W 3825 nt2.17□□□□□ -2.06
SSL2Q00578 EMP24YGL200C 612 nt2.17□□□□□ -2.06
SSL2Q00578 YJL120WYJL120W 324 nt2.17□□□□□ -2.06
SSL2Q00578 YKR075W-AYKR075W-A 270 nt2.17□□□□□ -2.06
SSL2Q00578 YBL053WYBL053W 375 nt2.17□□□□□ -2.06
SSL2Q00578 YBR174CYBR174C 315 nt2.17□□□□□ -2.06
SSL2Q00578 MCM10YIL150C 1716 nt2.17□□□□□ -2.06
SSL2Q00578 PMP1YCR024C-A 123 nt2.16□□□□□ -2.06
SSL2Q00578 YDR003W-AYDR003W-A 123 nt2.16□□□□□ -2.06
SSL2Q00578 YDR341CYDR341C 1824 nt2.16□□□□□ -2.06
SSL2Q00578 RTT107YHR154W 3213 nt2.15□□□□□ -2.07
SSL2Q00578 YOR161W-BYOR161W-B 261 nt2.15□□□□□ -2.07
SSL2Q00578 RPL33BYOR234C 324 nt2.15□□□□□ -2.07
SSL2Q00578 MSC6YOR354C 2079 nt2.14□□□□□ -2.07
SSL2Q00578 RPL34BYIL052C 366 nt2.14□□□□□ -2.07
SSL2Q00578 RPS25BYLR333C 327 nt2.14□□□□□ -2.07
SSL2Q00578 ZRG17YNR039C 1818 nt2.14□□□□□ -2.07
SSL2Q00578 PUT3YKL015W 2940 nt2.14□□□□□ -2.07
SSL2Q00578 CAT2YML042W 2013 nt2.13□□□□□ -2.07
SSL2Q00578 YCR102W-AYCR102W-A 198 nt2.13□□□□□ -2.07
SSL2Q00578 HSH155YMR288W 2916 nt2.12□□□□□ -2.07
SSL2Q00578 RLM1YPL089C 2031 nt2.12□□□□□ -2.07
SSL2Q00578 SYH1YPL105C 2550 nt2.11□□□□□ -2.07
SSL2Q00578 PRP42YDR235W 1635 nt2.11□□□□□ -2.07
SSL2Q00578 PAU3YCR104W 375 nt2.11□□□□□ -2.07
SSL2Q00578 RPL37BYDR500C 267 nt2.11□□□□□ -2.07
SSL2Q00578 YOR072W-BYOR072W-B 162 nt2.11□□□□□ -2.07
SSL2Q00578 ENV11YGR071C 2583 nt2.11□□□□□ -2.07
SSL2Q00578 KOG1YHR186C 4674 nt2.11□□□□□ -2.07
SSL2Q00578 RAD34YDR314C 2079 nt2.1□□□□□ -2.07
Retrieved 100 of 7,029 protein–RNA pairs in 44.9 ms