Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.86■□□□□ 0.61
RFX3P48380 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RFX3P48380 AL162412.1-201ENST00000567129 965 ntBASIC18.86■□□□□ 0.61
RFX3P48380 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.86■□□□□ 0.61
RFX3P48380 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.86■□□□□ 0.61
RFX3P48380 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.86■□□□□ 0.61
RFX3P48380 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 AP005212.1-201ENST00000581547 1997 ntBASIC18.86■□□□□ 0.61
RFX3P48380 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
RFX3P48380 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
RFX3P48380 AC092720.2-201ENST00000602388 1665 ntBASIC18.85■□□□□ 0.61
RFX3P48380 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.85■□□□□ 0.61
RFX3P48380 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
RFX3P48380 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
RFX3P48380 CYP21A1P-202ENST00000354927 1481 ntBASIC18.85■□□□□ 0.61
RFX3P48380 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
RFX3P48380 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.85■□□□□ 0.61
RFX3P48380 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.85■□□□□ 0.61
RFX3P48380 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.85■□□□□ 0.61
RFX3P48380 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
RFX3P48380 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
RFX3P48380 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.84■□□□□ 0.61
RFX3P48380 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
RFX3P48380 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.84■□□□□ 0.61
RFX3P48380 AC020907.5-201ENST00000624372 1936 ntBASIC18.84■□□□□ 0.61
RFX3P48380 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.84■□□□□ 0.61
RFX3P48380 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.84■□□□□ 0.61
RFX3P48380 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 AC006970.2-201ENST00000450065 779 ntBASIC18.84■□□□□ 0.61
RFX3P48380 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.84■□□□□ 0.61
RFX3P48380 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.84■□□□□ 0.61
RFX3P48380 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.84■□□□□ 0.61
RFX3P48380 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
RFX3P48380 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.83■□□□□ 0.61
RFX3P48380 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.83■□□□□ 0.61
RFX3P48380 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
RFX3P48380 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.83■□□□□ 0.61
RFX3P48380 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
RFX3P48380 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.83■□□□□ 0.6
RFX3P48380 AC093787.1-201ENST00000450396 207 ntBASIC18.83■□□□□ 0.6
RFX3P48380 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.83■□□□□ 0.6
RFX3P48380 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.83■□□□□ 0.6
RFX3P48380 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
RFX3P48380 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.82■□□□□ 0.6
RFX3P48380 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.82■□□□□ 0.6
RFX3P48380 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 PGM5P4-201ENST00000421970 445 ntBASIC18.82■□□□□ 0.6
RFX3P48380 AL355472.2-201ENST00000422958 438 ntBASIC18.82■□□□□ 0.6
RFX3P48380 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.82■□□□□ 0.6
RFX3P48380 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.82■□□□□ 0.6
RFX3P48380 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
RFX3P48380 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
RFX3P48380 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms