Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A2P08572 KSR1P1-201ENST00000446298 240 ntBASIC20.46■□□□□ 0.87
COL4A2P08572 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A2P08572 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL4A2P08572 AC004264.1-201ENST00000608354 794 ntBASIC20.46■□□□□ 0.87
COL4A2P08572 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A2P08572 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL4A2P08572 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A2P08572 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
COL4A2P08572 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL4A2P08572 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.45■□□□□ 0.86
COL4A2P08572 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A2P08572 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.45■□□□□ 0.86
COL4A2P08572 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A2P08572 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A2P08572 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC20.45■□□□□ 0.86
COL4A2P08572 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
COL4A2P08572 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A2P08572 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.45■□□□□ 0.86
COL4A2P08572 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A2P08572 AC244015.2-201ENST00000616358 1861 ntBASIC20.45■□□□□ 0.86
COL4A2P08572 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.45■□□□□ 0.86
COL4A2P08572 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL4A2P08572 MIR1238-201ENST00000408483 83 ntBASIC20.44■□□□□ 0.86
COL4A2P08572 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 AP002982.1-201ENST00000492365 877 ntBASIC20.44■□□□□ 0.86
COL4A2P08572 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.44■□□□□ 0.86
COL4A2P08572 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A2P08572 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.44■□□□□ 0.86
COL4A2P08572 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL4A2P08572 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL4A2P08572 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.43■□□□□ 0.86
COL4A2P08572 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A2P08572 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
COL4A2P08572 LINC01568-207ENST00000641790 1380 ntBASIC20.43■□□□□ 0.86
COL4A2P08572 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A2P08572 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A2P08572 FITM1-202ENST00000559294 800 ntBASIC20.43■□□□□ 0.86
COL4A2P08572 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.43■□□□□ 0.86
COL4A2P08572 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.43■□□□□ 0.86
COL4A2P08572 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.43■□□□□ 0.86
COL4A2P08572 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
COL4A2P08572 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.43■□□□□ 0.86
COL4A2P08572 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL4A2P08572 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL4A2P08572 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
COL4A2P08572 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A2P08572 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.42■□□□□ 0.86
COL4A2P08572 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL4A2P08572 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A2P08572 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.41■□□□□ 0.86
COL4A2P08572 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.41■□□□□ 0.86
COL4A2P08572 AC026271.3-201ENST00000571884 352 ntBASIC20.41■□□□□ 0.86
COL4A2P08572 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A2P08572 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A2P08572 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A2P08572 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL4A2P08572 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A2P08572 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.41■□□□□ 0.86
COL4A2P08572 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A2P08572 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL4A2P08572 MESTP1-201ENST00000404287 994 ntBASIC20.41■□□□□ 0.86
COL4A2P08572 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
COL4A2P08572 Z98882.1-201ENST00000622160 2253 ntBASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms