Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
AP3B1O00203 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.84
AP3B1O00203 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
AP3B1O00203 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.33■□□□□ 0.84
AP3B1O00203 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
AP3B1O00203 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.33■□□□□ 0.84
AP3B1O00203 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
AP3B1O00203 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.33■□□□□ 0.84
AP3B1O00203 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
AP3B1O00203 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
AP3B1O00203 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 TMEM179-206ENST00000616017 1645 ntBASIC20.32■□□□□ 0.84
AP3B1O00203 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.32■□□□□ 0.84
AP3B1O00203 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.32■□□□□ 0.84
AP3B1O00203 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 AC105020.6-201ENST00000621523 1217 ntBASIC20.32■□□□□ 0.84
AP3B1O00203 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.32■□□□□ 0.84
AP3B1O00203 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
AP3B1O00203 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
AP3B1O00203 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.32■□□□□ 0.84
AP3B1O00203 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.31■□□□□ 0.84
AP3B1O00203 ANKRD20A6P-201ENST00000618763 204 ntBASIC20.31■□□□□ 0.84
AP3B1O00203 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
AP3B1O00203 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.31■□□□□ 0.84
AP3B1O00203 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
AP3B1O00203 AC112907.3-201ENST00000577781 2400 ntBASIC20.31■□□□□ 0.84
AP3B1O00203 RNF165-205ENST00000588679 2904 ntBASIC20.3■□□□□ 0.84
AP3B1O00203 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
AP3B1O00203 AL391422.3-201ENST00000603791 2761 ntBASIC20.3■□□□□ 0.84
AP3B1O00203 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
AP3B1O00203 AL162430.1-201ENST00000480705 870 ntBASIC20.3■□□□□ 0.84
AP3B1O00203 CYP2T3P-201ENST00000601990 817 ntBASIC20.3■□□□□ 0.84
AP3B1O00203 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
AP3B1O00203 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.3■□□□□ 0.84
AP3B1O00203 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.3■□□□□ 0.84
AP3B1O00203 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
AP3B1O00203 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.29■□□□□ 0.84
AP3B1O00203 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
AP3B1O00203 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.29■□□□□ 0.84
AP3B1O00203 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 CYP2T1P-201ENST00000432607 1285 ntBASIC20.29■□□□□ 0.84
AP3B1O00203 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
AP3B1O00203 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.29■□□□□ 0.84
AP3B1O00203 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
AP3B1O00203 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.29■□□□□ 0.84
AP3B1O00203 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
AP3B1O00203 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
AP3B1O00203 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.29■□□□□ 0.84
AP3B1O00203 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms