Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AC055733.4-201ENST00000638462 1354 ntBASIC14.7□□□□□ -0.06
SMKR1H3BMG3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 H19-201ENST00000411754 1788 ntTSL 5 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SMKR1H3BMG3 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 AC009299.2-201ENST00000482477 511 ntBASIC14.68□□□□□ -0.06
SMKR1H3BMG3 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 AL691432.2-201ENST00000607222 2038 ntBASIC14.68□□□□□ -0.06
SMKR1H3BMG3 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SMKR1H3BMG3 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 AC061975.6-201ENST00000579045 1553 ntBASIC14.67□□□□□ -0.06
SMKR1H3BMG3 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
SMKR1H3BMG3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms