Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC35.17■■■■□ 3.22
CCDC88BA6NC98 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
CCDC88BA6NC98 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC35.17■■■■□ 3.22
CCDC88BA6NC98 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC35.17■■■■□ 3.22
CCDC88BA6NC98 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC35.17■■■■□ 3.22
CCDC88BA6NC98 TERF1P1-201ENST00000311003 1181 ntBASIC35.16■■■■□ 3.22
CCDC88BA6NC98 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 AP002982.1-201ENST00000492365 877 ntBASIC35.16■■■■□ 3.22
CCDC88BA6NC98 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 FITM1-202ENST00000559294 800 ntBASIC35.16■■■■□ 3.22
CCDC88BA6NC98 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 KRT18P57-201ENST00000443599 1254 ntBASIC35.16■■■■□ 3.22
CCDC88BA6NC98 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC35.16■■■■□ 3.22
CCDC88BA6NC98 AC004264.1-201ENST00000608354 794 ntBASIC35.16■■■■□ 3.22
CCDC88BA6NC98 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
CCDC88BA6NC98 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
CCDC88BA6NC98 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
CCDC88BA6NC98 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
CCDC88BA6NC98 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC35.14■■■■□ 3.22
CCDC88BA6NC98 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
CCDC88BA6NC98 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
CCDC88BA6NC98 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC35.13■■■■□ 3.21
CCDC88BA6NC98 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC35.13■■■■□ 3.21
CCDC88BA6NC98 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC35.13■■■■□ 3.21
CCDC88BA6NC98 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 MESTP1-201ENST00000404287 994 ntBASIC35.12■■■■□ 3.21
CCDC88BA6NC98 KSR1P1-201ENST00000446298 240 ntBASIC35.12■■■■□ 3.21
CCDC88BA6NC98 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
CCDC88BA6NC98 KRT16P1-201ENST00000399124 1418 ntBASIC35.11■■■■□ 3.21
CCDC88BA6NC98 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 AC005363.2-201ENST00000618631 242 ntBASIC35.11■■■■□ 3.21
CCDC88BA6NC98 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 AL024507.2-201ENST00000606070 2574 ntBASIC35.11■■■■□ 3.21
CCDC88BA6NC98 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC35.11■■■■□ 3.21
CCDC88BA6NC98 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 AL049597.2-201ENST00000565575 961 ntBASIC35.1■■■■□ 3.21
CCDC88BA6NC98 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 LINC01568-207ENST00000641790 1380 ntBASIC35.1■■■■□ 3.21
CCDC88BA6NC98 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC35.1■■■■□ 3.21
CCDC88BA6NC98 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 H19-201ENST00000411754 1788 ntTSL 5 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC35.09■■■■□ 3.21
CCDC88BA6NC98 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 C1QL1P1-201ENST00000568105 661 ntBASIC35.08■■■■□ 3.21
CCDC88BA6NC98 NT5C-211ENST00000582170 653 ntTSL 3 BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC35.08■■■■□ 3.21
CCDC88BA6NC98 AL049796.1-201ENST00000565336 1766 ntBASIC35.08■■■■□ 3.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms