Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 CCR12P-201ENST00000446203 998 ntBASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 AP002469.2-201ENST00000531724 424 ntBASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.69■□□□□ 0.9
COL25A1Q9BXS0 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 AL590627.1-203ENST00000421194 1026 ntBASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 AC112907.2-201ENST00000448639 330 ntBASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 AC010653.2-201ENST00000623505 997 ntBASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL25A1Q9BXS0 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 AP003733.4-201ENST00000623785 1697 ntBASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
COL25A1Q9BXS0 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 PMS2P2-201ENST00000425039 1128 ntBASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 DUSP8P4-201ENST00000399538 1761 ntBASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.66■□□□□ 0.9
COL25A1Q9BXS0 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 MRPL3P1-201ENST00000400109 1033 ntBASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 AC007663.1-201ENST00000438948 1240 ntBASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 SNX5-210ENST00000481323 562 ntTSL 3 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL25A1Q9BXS0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL25A1Q9BXS0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.9
COL25A1Q9BXS0 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL25A1Q9BXS0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL25A1Q9BXS0 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.64■□□□□ 0.9
COL25A1Q9BXS0 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms