Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC33.82■■■■□ 3
IFT140Q96RY7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC33.82■■■■□ 3
IFT140Q96RY7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC33.82■■■■□ 3
IFT140Q96RY7 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC33.82■■■■□ 3
IFT140Q96RY7 PPP1R14BP5-201ENST00000440334 435 ntBASIC33.82■■■■□ 3
IFT140Q96RY7 AC128688.1-201ENST00000487626 519 ntBASIC33.82■■■■□ 3
IFT140Q96RY7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC33.82■■■■□ 3
IFT140Q96RY7 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC33.82■■■■□ 3
IFT140Q96RY7 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC33.82■■■■□ 3
IFT140Q96RY7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC33.81■■■■□ 3
IFT140Q96RY7 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
IFT140Q96RY7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC33.81■■■■□ 3
IFT140Q96RY7 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC33.81■■■■□ 3
IFT140Q96RY7 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
IFT140Q96RY7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC33.8■■■■□ 3
IFT140Q96RY7 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC33.8■■■■□ 3
IFT140Q96RY7 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC33.8■■■■□ 3
IFT140Q96RY7 AL445675.2-201ENST00000620291 557 ntBASIC33.8■■■■□ 3
IFT140Q96RY7 AL138966.2-201ENST00000621997 464 ntBASIC33.8■■■■□ 3
IFT140Q96RY7 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC33.8■■■■□ 3
IFT140Q96RY7 MED25-212ENST00000618715 1467 ntTSL 5 BASIC33.8■■■■□ 3
IFT140Q96RY7 AC080038.3-201ENST00000623346 1952 ntBASIC33.79■■■■□ 3
IFT140Q96RY7 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC33.79■■■■□ 3
IFT140Q96RY7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC33.79■■■■□ 3
IFT140Q96RY7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC33.79■■■■□ 3
IFT140Q96RY7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC33.79■■■■□ 3
IFT140Q96RY7 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC33.79■■■■□ 3
IFT140Q96RY7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC33.79■■■■□ 3
IFT140Q96RY7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC33.79■■■■□ 3
IFT140Q96RY7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC33.79■■■■□ 3
IFT140Q96RY7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
IFT140Q96RY7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC33.79■■■■□ 3
IFT140Q96RY7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
IFT140Q96RY7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC33.79■■■■□ 3
IFT140Q96RY7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC33.78■■■■□ 3
IFT140Q96RY7 AC127496.7-201ENST00000625110 1798 ntBASIC33.78■■■■□ 3
IFT140Q96RY7 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC33.78■■■■□ 3
IFT140Q96RY7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC33.78■■■■□ 3
IFT140Q96RY7 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC33.78■■■■□ 3
IFT140Q96RY7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC33.78■■■■□ 3
IFT140Q96RY7 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC33.78■■■■□ 3
IFT140Q96RY7 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC33.78■■■■□ 3
IFT140Q96RY7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC33.78■■■■□ 3
IFT140Q96RY7 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC33.77■■■■□ 3
IFT140Q96RY7 HMGA1P5-201ENST00000412453 271 ntBASIC33.77■■■■□ 3
IFT140Q96RY7 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC33.77■■■■□ 3
IFT140Q96RY7 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC33.77■■■■□ 3
IFT140Q96RY7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC33.77■■■■□ 3
IFT140Q96RY7 AL121956.5-201ENST00000625261 221 ntBASIC33.77■■■■□ 3
IFT140Q96RY7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
IFT140Q96RY7 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC33.77■■■■□ 3
IFT140Q96RY7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC33.76■■■■□ 3
IFT140Q96RY7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC33.76■■■■□ 3
IFT140Q96RY7 RNF152P1-201ENST00000397754 604 ntBASIC33.76■■■■□ 3
IFT140Q96RY7 FAM207BP-201ENST00000447172 505 ntBASIC33.76■■■■□ 3
IFT140Q96RY7 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC33.76■■■■□ 3
IFT140Q96RY7 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC33.76■■■□□ 2.99
IFT140Q96RY7 YBX1P2-201ENST00000489612 999 ntBASIC33.76■■■□□ 2.99
IFT140Q96RY7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC33.76■■■□□ 2.99
IFT140Q96RY7 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC33.75■■■□□ 2.99
IFT140Q96RY7 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC33.75■■■□□ 2.99
IFT140Q96RY7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC33.75■■■□□ 2.99
IFT140Q96RY7 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC33.75■■■□□ 2.99
IFT140Q96RY7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC33.75■■■□□ 2.99
IFT140Q96RY7 AC139887.4-201ENST00000607877 719 ntBASIC33.75■■■□□ 2.99
IFT140Q96RY7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC33.74■■■□□ 2.99
IFT140Q96RY7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
IFT140Q96RY7 BET1L-202ENST00000332865 533 ntTSL 5 BASIC33.74■■■□□ 2.99
IFT140Q96RY7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC33.74■■■□□ 2.99
IFT140Q96RY7 FAM86EP-206ENST00000510506 987 ntBASIC33.74■■■□□ 2.99
IFT140Q96RY7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC33.74■■■□□ 2.99
IFT140Q96RY7 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC33.74■■■□□ 2.99
IFT140Q96RY7 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC33.74■■■□□ 2.99
IFT140Q96RY7 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC33.73■■■□□ 2.99
IFT140Q96RY7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC33.73■■■□□ 2.99
IFT140Q96RY7 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC33.72■■■□□ 2.99
IFT140Q96RY7 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC33.72■■■□□ 2.99
IFT140Q96RY7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC33.72■■■□□ 2.99
IFT140Q96RY7 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC33.72■■■□□ 2.99
IFT140Q96RY7 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
IFT140Q96RY7 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC33.72■■■□□ 2.99
IFT140Q96RY7 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
IFT140Q96RY7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC33.71■■■□□ 2.99
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms