Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 RBM17P1-201ENST00000453646 1190 ntBASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.21■□□□□ 0.51
SNRNP40Q96DI7 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.5
SNRNP40Q96DI7 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
SNRNP40Q96DI7 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.5
SNRNP40Q96DI7 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 UNC93B2-201ENST00000285383 730 ntBASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 NUDT16P1-203ENST00000513809 620 ntBASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 AC079598.2-202ENST00000546624 1451 ntBASIC18.2■□□□□ 0.5
SNRNP40Q96DI7 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 AC242852.2-201ENST00000615738 1807 ntBASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 PNN-205ENST00000556530 601 ntTSL 2 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 KRT8P9-201ENST00000558927 1449 ntBASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 AC004264.1-201ENST00000608354 794 ntBASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 REXO1L10P-201ENST00000615707 1290 ntBASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC18.19■□□□□ 0.5
SNRNP40Q96DI7 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AC005521.1-201ENST00000393351 872 ntBASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AP002982.1-201ENST00000492365 877 ntBASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AP000525.1-201ENST00000608286 694 ntBASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AL121906.2-201ENST00000621597 723 ntBASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 AC011484.1-201ENST00000377652 1995 ntBASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.18■□□□□ 0.5
SNRNP40Q96DI7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 TREX2-204ENST00000370212 861 ntTSL 5 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 MIR1238-201ENST00000408483 83 ntBASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.17■□□□□ 0.5
SNRNP40Q96DI7 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms