Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CLIP4Q8N3C7 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLIP4Q8N3C7 AC112907.3-201ENST00000577781 2400 ntBASIC18.83■□□□□ 0.61
CLIP4Q8N3C7 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.83■□□□□ 0.61
CLIP4Q8N3C7 AC092720.2-201ENST00000602388 1665 ntBASIC18.83■□□□□ 0.61
CLIP4Q8N3C7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 AC087623.3-201ENST00000607047 1098 ntBASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLIP4Q8N3C7 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 AC034268.1-201ENST00000441047 882 ntBASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLIP4Q8N3C7 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 MIR6821-201ENST00000617625 74 ntBASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 MYCNOS-205ENST00000641950 531 ntBASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLIP4Q8N3C7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 AC007322.3-201ENST00000426526 701 ntBASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CLIP4Q8N3C7 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms