Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX4Q33E94 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
RFX4Q33E94 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
RFX4Q33E94 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
RFX4Q33E94 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX4Q33E94 AL031432.3-201ENST00000607698 485 ntBASIC18.71■□□□□ 0.59
RFX4Q33E94 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.71■□□□□ 0.59
RFX4Q33E94 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX4Q33E94 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 AC061975.6-201ENST00000579045 1553 ntBASIC18.71■□□□□ 0.59
RFX4Q33E94 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.71■□□□□ 0.59
RFX4Q33E94 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC18.71■□□□□ 0.59
RFX4Q33E94 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
RFX4Q33E94 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
RFX4Q33E94 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
RFX4Q33E94 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 AC004408.2-201ENST00000623613 2777 ntBASIC18.7■□□□□ 0.58
RFX4Q33E94 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX4Q33E94 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
RFX4Q33E94 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.7■□□□□ 0.58
RFX4Q33E94 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX4Q33E94 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.7■□□□□ 0.58
RFX4Q33E94 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
RFX4Q33E94 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
RFX4Q33E94 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
RFX4Q33E94 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
RFX4Q33E94 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFX4Q33E94 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC18.69■□□□□ 0.58
RFX4Q33E94 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC18.69■□□□□ 0.58
RFX4Q33E94 TPRG1LP1-201ENST00000598702 760 ntBASIC18.69■□□□□ 0.58
RFX4Q33E94 AL354811.1-201ENST00000610286 706 ntBASIC18.69■□□□□ 0.58
RFX4Q33E94 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
RFX4Q33E94 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.69■□□□□ 0.58
RFX4Q33E94 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
RFX4Q33E94 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
RFX4Q33E94 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
RFX4Q33E94 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.68■□□□□ 0.58
RFX4Q33E94 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.68■□□□□ 0.58
RFX4Q33E94 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFX4Q33E94 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.68■□□□□ 0.58
RFX4Q33E94 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
RFX4Q33E94 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
RFX4Q33E94 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
RFX4Q33E94 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RFX4Q33E94 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RFX4Q33E94 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.67■□□□□ 0.58
RFX4Q33E94 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms