Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 RARRES2P10-201ENST00000564312 460 ntBASIC19.38■□□□□ 0.69
COL28A1Q2UY09 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 NTF6B-201ENST00000591913 560 ntBASIC19.38■□□□□ 0.69
COL28A1Q2UY09 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 AC145285.6-201ENST00000604632 637 ntBASIC19.38■□□□□ 0.69
COL28A1Q2UY09 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL28A1Q2UY09 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 AC087388.1-201ENST00000571370 1112 ntBASIC19.37■□□□□ 0.69
COL28A1Q2UY09 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
COL28A1Q2UY09 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.36■□□□□ 0.69
COL28A1Q2UY09 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 KRT18P68-201ENST00000392293 1000 ntBASIC19.35■□□□□ 0.69
COL28A1Q2UY09 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL28A1Q2UY09 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 CDV3P1-201ENST00000471403 739 ntBASIC19.34■□□□□ 0.69
COL28A1Q2UY09 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.34■□□□□ 0.69
COL28A1Q2UY09 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL28A1Q2UY09 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL28A1Q2UY09 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL28A1Q2UY09 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 AL355355.2-201ENST00000442321 338 ntBASIC19.33■□□□□ 0.68
COL28A1Q2UY09 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL28A1Q2UY09 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 AC061975.6-201ENST00000579045 1553 ntBASIC19.32■□□□□ 0.68
COL28A1Q2UY09 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.32■□□□□ 0.68
COL28A1Q2UY09 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms