Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC28.14■■■□□ 2.1
MSH6P52701 TSPY14P-201ENST00000303979 915 ntBASIC28.14■■■□□ 2.1
MSH6P52701 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC28.14■■■□□ 2.1
MSH6P52701 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
MSH6P52701 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
MSH6P52701 BX664615.1-201ENST00000443558 458 ntBASIC28.14■■■□□ 2.1
MSH6P52701 AP005242.2-201ENST00000580065 1175 ntBASIC28.14■■■□□ 2.1
MSH6P52701 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC28.14■■■□□ 2.1
MSH6P52701 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC28.14■■■□□ 2.1
MSH6P52701 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
MSH6P52701 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
MSH6P52701 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
MSH6P52701 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.1
MSH6P52701 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC28.14■■■□□ 2.1
MSH6P52701 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
MSH6P52701 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.09
MSH6P52701 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC28.14■■■□□ 2.09
MSH6P52701 FAM99A-202ENST00000538190 1989 ntBASIC28.14■■■□□ 2.09
MSH6P52701 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
MSH6P52701 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
MSH6P52701 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC28.13■■■□□ 2.09
MSH6P52701 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC28.13■■■□□ 2.09
MSH6P52701 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
MSH6P52701 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
MSH6P52701 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC28.13■■■□□ 2.09
MSH6P52701 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC28.13■■■□□ 2.09
MSH6P52701 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC28.13■■■□□ 2.09
MSH6P52701 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC28.13■■■□□ 2.09
MSH6P52701 MED25-212ENST00000618715 1467 ntTSL 5 BASIC28.13■■■□□ 2.09
MSH6P52701 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
MSH6P52701 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 FAM8A6P-201ENST00000407496 1135 ntBASIC28.12■■■□□ 2.09
MSH6P52701 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 DUSP5P1-201ENST00000441325 1139 ntBASIC28.12■■■□□ 2.09
MSH6P52701 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC28.12■■■□□ 2.09
MSH6P52701 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC28.12■■■□□ 2.09
MSH6P52701 GRAMD4P8-201ENST00000605465 1115 ntBASIC28.12■■■□□ 2.09
MSH6P52701 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC28.12■■■□□ 2.09
MSH6P52701 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC28.12■■■□□ 2.09
MSH6P52701 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC28.12■■■□□ 2.09
MSH6P52701 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
MSH6P52701 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC28.11■■■□□ 2.09
MSH6P52701 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 AL031133.1-201ENST00000406807 723 ntBASIC28.11■■■□□ 2.09
MSH6P52701 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC28.11■■■□□ 2.09
MSH6P52701 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC28.11■■■□□ 2.09
MSH6P52701 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC28.11■■■□□ 2.09
MSH6P52701 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC28.11■■■□□ 2.09
MSH6P52701 AP000550.4-202ENST00000639755 178 ntBASIC28.11■■■□□ 2.09
MSH6P52701 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC28.11■■■□□ 2.09
MSH6P52701 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC28.11■■■□□ 2.09
MSH6P52701 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 AC026396.1-201ENST00000419388 421 ntBASIC28.11■■■□□ 2.09
MSH6P52701 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC28.11■■■□□ 2.09
MSH6P52701 AC117947.1-201ENST00000427448 529 ntBASIC28.11■■■□□ 2.09
MSH6P52701 SAPCD2P2-201ENST00000431719 1174 ntBASIC28.11■■■□□ 2.09
MSH6P52701 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC28.11■■■□□ 2.09
MSH6P52701 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
MSH6P52701 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 STK25-205ENST00000405883 1904 ntTSL 2 BASIC28.1■■■□□ 2.09
MSH6P52701 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC28.1■■■□□ 2.09
MSH6P52701 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC28.1■■■□□ 2.09
MSH6P52701 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC28.1■■■□□ 2.09
MSH6P52701 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
MSH6P52701 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
MSH6P52701 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC28.1■■■□□ 2.09
MSH6P52701 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC28.1■■■□□ 2.09
MSH6P52701 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC28.1■■■□□ 2.09
MSH6P52701 FAM87A-204ENST00000613235 858 ntBASIC28.1■■■□□ 2.09
MSH6P52701 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC28.1■■■□□ 2.09
MSH6P52701 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC28.09■■■□□ 2.09
MSH6P52701 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC28.09■■■□□ 2.09
MSH6P52701 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 MESTP1-201ENST00000404287 994 ntBASIC28.09■■■□□ 2.09
MSH6P52701 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC28.09■■■□□ 2.09
MSH6P52701 CLN6-204ENST00000564752 900 ntTSL 3 BASIC28.09■■■□□ 2.09
MSH6P52701 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC28.09■■■□□ 2.09
MSH6P52701 DBP-204ENST00000599385 709 ntTSL 3 BASIC28.09■■■□□ 2.09
MSH6P52701 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC28.09■■■□□ 2.09
MSH6P52701 AL031985.4-201ENST00000642138 673 ntBASIC28.09■■■□□ 2.09
MSH6P52701 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
MSH6P52701 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms