Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LSM12P1-201ENST00000411836 588 ntBASIC18.93■□□□□ 0.62
SOX3P41225 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX3P41225 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC18.93■□□□□ 0.62
SOX3P41225 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX3P41225 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.93■□□□□ 0.62
SOX3P41225 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SOX3P41225 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.93■□□□□ 0.62
SOX3P41225 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SOX3P41225 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SOX3P41225 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 CYP21A1P-202ENST00000354927 1481 ntBASIC18.92■□□□□ 0.62
SOX3P41225 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18.92■□□□□ 0.62
SOX3P41225 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SOX3P41225 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX3P41225 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
SOX3P41225 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 KRT18P6-201ENST00000555540 1265 ntBASIC18.92■□□□□ 0.62
SOX3P41225 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX3P41225 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX3P41225 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.92■□□□□ 0.62
SOX3P41225 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SOX3P41225 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SOX3P41225 AC073314.1-201ENST00000568729 2216 ntBASIC18.92■□□□□ 0.62
SOX3P41225 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
SOX3P41225 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.92■□□□□ 0.62
SOX3P41225 AP005212.1-201ENST00000581547 1997 ntBASIC18.92■□□□□ 0.62
SOX3P41225 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
SOX3P41225 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SOX3P41225 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 GABARAPL3-202ENST00000624044 1851 ntBASIC18.91■□□□□ 0.62
SOX3P41225 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX3P41225 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.91■□□□□ 0.62
SOX3P41225 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 DUSP5P2-201ENST00000426873 1033 ntBASIC18.91■□□□□ 0.62
SOX3P41225 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX3P41225 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
SOX3P41225 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
SOX3P41225 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX3P41225 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX3P41225 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.9■□□□□ 0.62
SOX3P41225 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX3P41225 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX3P41225 AC091874.3-201ENST00000512672 1195 ntBASIC18.9■□□□□ 0.62
SOX3P41225 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.9■□□□□ 0.62
SOX3P41225 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.9■□□□□ 0.62
SOX3P41225 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX3P41225 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC18.89■□□□□ 0.62
SOX3P41225 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX3P41225 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX3P41225 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SOX3P41225 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX3P41225 KRT18P68-201ENST00000392293 1000 ntBASIC18.89■□□□□ 0.61
SOX3P41225 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.89■□□□□ 0.61
SOX3P41225 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.89■□□□□ 0.61
SOX3P41225 CD99P1-205ENST00000527459 561 ntBASIC18.89■□□□□ 0.61
SOX3P41225 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX3P41225 AL589743.5-201ENST00000616611 1050 ntBASIC18.89■□□□□ 0.61
SOX3P41225 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
SOX3P41225 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms