Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.42■□□□□ 0.7
LDLRP01130 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
LDLRP01130 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.42■□□□□ 0.7
LDLRP01130 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.42■□□□□ 0.7
LDLRP01130 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
LDLRP01130 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.42■□□□□ 0.7
LDLRP01130 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LDLRP01130 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
LDLRP01130 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 AP006587.3-201ENST00000525742 1516 ntBASIC19.41■□□□□ 0.7
LDLRP01130 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.41■□□□□ 0.7
LDLRP01130 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.41■□□□□ 0.7
LDLRP01130 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.41■□□□□ 0.7
LDLRP01130 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.41■□□□□ 0.7
LDLRP01130 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.41■□□□□ 0.7
LDLRP01130 SMUG1P1-201ENST00000590640 811 ntBASIC19.41■□□□□ 0.7
LDLRP01130 AC133041.1-202ENST00000642053 222 ntBASIC19.41■□□□□ 0.7
LDLRP01130 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LDLRP01130 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LDLRP01130 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.4■□□□□ 0.7
LDLRP01130 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.4■□□□□ 0.7
LDLRP01130 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.4■□□□□ 0.7
LDLRP01130 AC073210.2-201ENST00000430369 194 ntBASIC19.4■□□□□ 0.7
LDLRP01130 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LDLRP01130 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
LDLRP01130 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.4■□□□□ 0.7
LDLRP01130 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
LDLRP01130 AC099778.1-201ENST00000568593 1911 ntBASIC19.39■□□□□ 0.7
LDLRP01130 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
LDLRP01130 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LDLRP01130 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.39■□□□□ 0.69
LDLRP01130 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LDLRP01130 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
LDLRP01130 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LDLRP01130 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
LDLRP01130 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LDLRP01130 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.39■□□□□ 0.69
LDLRP01130 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
LDLRP01130 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 SMG8-203ENST00000578922 2178 ntBASIC19.39■□□□□ 0.69
LDLRP01130 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LDLRP01130 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LDLRP01130 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDLRP01130 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDLRP01130 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDLRP01130 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
LDLRP01130 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.38■□□□□ 0.69
LDLRP01130 POU5F1P3-201ENST00000428824 1078 ntBASIC19.38■□□□□ 0.69
LDLRP01130 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.38■□□□□ 0.69
LDLRP01130 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.38■□□□□ 0.69
LDLRP01130 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LDLRP01130 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LDLRP01130 ITM2C-210ENST00000620962 501 ntBASIC19.38■□□□□ 0.69
LDLRP01130 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDLRP01130 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LDLRP01130 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms