Protein–RNA interactions for Protein: O95104

SCAF4, Splicing factor, arginine/serine-rich 15, humanhuman

Known RBP Predictions only

Length 1,147 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4O95104 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.45■□□□□ 0.22
SCAF4O95104 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC16.45■□□□□ 0.22
SCAF4O95104 ZNRF2P3-201ENST00000424200 374 ntBASIC16.45■□□□□ 0.22
SCAF4O95104 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.45■□□□□ 0.22
SCAF4O95104 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.45■□□□□ 0.22
SCAF4O95104 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.45■□□□□ 0.22
SCAF4O95104 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SCAF4O95104 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.45■□□□□ 0.22
SCAF4O95104 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.44■□□□□ 0.22
SCAF4O95104 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.44■□□□□ 0.22
SCAF4O95104 AC092720.2-201ENST00000602388 1665 ntBASIC16.44■□□□□ 0.22
SCAF4O95104 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.44■□□□□ 0.22
SCAF4O95104 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SCAF4O95104 LGR4-203ENST00000480977 492 ntTSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 TNXA-203ENST00000507684 2038 ntBASIC16.44■□□□□ 0.22
SCAF4O95104 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.44■□□□□ 0.22
SCAF4O95104 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SCAF4O95104 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SCAF4O95104 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.43■□□□□ 0.22
SCAF4O95104 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.43■□□□□ 0.22
SCAF4O95104 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC16.43■□□□□ 0.22
SCAF4O95104 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.43■□□□□ 0.22
SCAF4O95104 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 AP000974.1-201ENST00000623909 2387 ntBASIC16.43■□□□□ 0.22
SCAF4O95104 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SCAF4O95104 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC16.43■□□□□ 0.22
SCAF4O95104 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SCAF4O95104 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 AL512408.1-201ENST00000569378 2000 ntBASIC16.42■□□□□ 0.22
SCAF4O95104 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SCAF4O95104 RHOF-204ENST00000537265 699 ntTSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC16.42■□□□□ 0.22
SCAF4O95104 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC16.42■□□□□ 0.22
SCAF4O95104 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SCAF4O95104 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms