Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNF40O75150 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
RNF40O75150 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
RNF40O75150 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RNF40O75150 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
RNF40O75150 MIR4758-201ENST00000577688 71 ntBASIC21.67■■□□□ 1.06
RNF40O75150 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RNF40O75150 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RNF40O75150 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.67■■□□□ 1.06
RNF40O75150 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
RNF40O75150 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
RNF40O75150 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
RNF40O75150 AC006128.1-201ENST00000624704 1661 ntBASIC21.66■■□□□ 1.06
RNF40O75150 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
RNF40O75150 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.66■■□□□ 1.06
RNF40O75150 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.66■■□□□ 1.06
RNF40O75150 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 AC053503.5-201ENST00000601508 636 ntBASIC21.66■■□□□ 1.06
RNF40O75150 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.66■■□□□ 1.06
RNF40O75150 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RNF40O75150 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RNF40O75150 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.66■■□□□ 1.06
RNF40O75150 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
RNF40O75150 SMG8-203ENST00000578922 2178 ntBASIC21.65■■□□□ 1.06
RNF40O75150 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.65■■□□□ 1.06
RNF40O75150 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.65■■□□□ 1.06
RNF40O75150 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RNF40O75150 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RNF40O75150 MKRN4P-201ENST00000444706 1521 ntBASIC21.65■■□□□ 1.06
RNF40O75150 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RNF40O75150 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF40O75150 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF40O75150 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
RNF40O75150 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RNF40O75150 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.64■■□□□ 1.05
RNF40O75150 MIPEPP3-201ENST00000412105 444 ntBASIC21.64■■□□□ 1.05
RNF40O75150 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.64■■□□□ 1.05
RNF40O75150 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF40O75150 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
RNF40O75150 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.64■■□□□ 1.05
RNF40O75150 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
RNF40O75150 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 AC018445.3-201ENST00000624177 1945 ntBASIC21.63■■□□□ 1.05
RNF40O75150 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 AC112907.3-201ENST00000577781 2400 ntBASIC21.63■■□□□ 1.05
RNF40O75150 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC21.63■■□□□ 1.05
RNF40O75150 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.63■■□□□ 1.05
RNF40O75150 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 AC007322.4-201ENST00000509611 723 ntBASIC21.63■■□□□ 1.05
RNF40O75150 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.63■■□□□ 1.05
RNF40O75150 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.63■■□□□ 1.05
RNF40O75150 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
RNF40O75150 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC21.63■■□□□ 1.05
RNF40O75150 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF40O75150 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF40O75150 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF40O75150 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF40O75150 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.62■■□□□ 1.05
RNF40O75150 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
RNF40O75150 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms