Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
UPK1AO00322 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.13■□□□□ 0.65
UPK1AO00322 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 MIR2861-201ENST00000636310 90 ntBASIC19.13■□□□□ 0.65
UPK1AO00322 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
UPK1AO00322 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
UPK1AO00322 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.13■□□□□ 0.65
UPK1AO00322 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
UPK1AO00322 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 CNN2P6-201ENST00000439038 900 ntBASIC19.12■□□□□ 0.65
UPK1AO00322 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.12■□□□□ 0.65
UPK1AO00322 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.12■□□□□ 0.65
UPK1AO00322 BID-214ENST00000617586 542 ntTSL 5 BASIC19.12■□□□□ 0.65
UPK1AO00322 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
UPK1AO00322 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
UPK1AO00322 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.12■□□□□ 0.65
UPK1AO00322 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.11■□□□□ 0.65
UPK1AO00322 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
UPK1AO00322 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.11■□□□□ 0.65
UPK1AO00322 AL162412.1-201ENST00000567129 965 ntBASIC19.11■□□□□ 0.65
UPK1AO00322 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 FAM21FP-204ENST00000608637 956 ntBASIC19.11■□□□□ 0.65
UPK1AO00322 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.11■□□□□ 0.65
UPK1AO00322 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
UPK1AO00322 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
UPK1AO00322 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
UPK1AO00322 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.1■□□□□ 0.65
UPK1AO00322 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
UPK1AO00322 AC092437.1-201ENST00000624794 1048 ntBASIC19.1■□□□□ 0.65
UPK1AO00322 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.1■□□□□ 0.65
UPK1AO00322 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.1■□□□□ 0.65
UPK1AO00322 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
UPK1AO00322 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.1■□□□□ 0.65
UPK1AO00322 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.1■□□□□ 0.65
UPK1AO00322 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.09■□□□□ 0.65
UPK1AO00322 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.09■□□□□ 0.65
UPK1AO00322 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
UPK1AO00322 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms