Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
SMKR1H3BMG3 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 AC092171.4-201ENST00000609130 632 ntBASIC14.72□□□□□ -0.05
SMKR1H3BMG3 RASSF1-AS1-201ENST00000629828 790 ntBASIC14.72□□□□□ -0.05
SMKR1H3BMG3 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
SMKR1H3BMG3 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 AC093503.3-201ENST00000624917 2352 ntBASIC14.71□□□□□ -0.05
SMKR1H3BMG3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 CREM-229ENST00000474362 1030 ntTSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
SMKR1H3BMG3 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
SMKR1H3BMG3 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SERBP1P1-201ENST00000396021 1160 ntBASIC14.7□□□□□ -0.06
SMKR1H3BMG3 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 KRT16P3-201ENST00000439127 1283 ntBASIC14.7□□□□□ -0.06
SMKR1H3BMG3 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC14.7□□□□□ -0.06
SMKR1H3BMG3 AL356740.2-201ENST00000601559 647 ntBASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms