Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 FAM197Y1-201ENST00000421178 764 ntBASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
PCDHGA1Q9Y5H4 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
PCDHGA1Q9Y5H4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 UNC93B2-201ENST00000285383 730 ntBASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 NUDT16P1-203ENST00000513809 620 ntBASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 AC004264.1-201ENST00000608354 794 ntBASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 MIR6786-201ENST00000616843 113 ntBASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 AL121906.2-201ENST00000621597 723 ntBASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
PCDHGA1Q9Y5H4 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 RBM17P1-201ENST00000453646 1190 ntBASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
PCDHGA1Q9Y5H4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
PCDHGA1Q9Y5H4 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms