Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
HINT3Q9NQE9 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AC087289.5-201ENST00000586076 3175 ntBASIC18.23■□□□□ 0.51
HINT3Q9NQE9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 SLC7A5P2-201ENST00000553010 536 ntBASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AL158211.5-201ENST00000623583 2518 ntBASIC18.23■□□□□ 0.51
HINT3Q9NQE9 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 AC116562.4-201ENST00000641316 2276 ntBASIC18.23■□□□□ 0.51
HINT3Q9NQE9 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
HINT3Q9NQE9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 AC004854.2-201ENST00000608450 1441 ntBASIC18.22■□□□□ 0.51
HINT3Q9NQE9 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
HINT3Q9NQE9 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 AC022517.1-201ENST00000592429 346 ntBASIC18.21■□□□□ 0.51
HINT3Q9NQE9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
HINT3Q9NQE9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 AC104187.1-201ENST00000607510 612 ntBASIC18.2■□□□□ 0.5
HINT3Q9NQE9 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
HINT3Q9NQE9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.19■□□□□ 0.5
HINT3Q9NQE9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms