Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AC010203.1-204ENST00000548782 407 ntBASIC20.16■□□□□ 0.82
VPS13AQ96RL7 AC023511.2-201ENST00000618803 211 ntBASIC20.16■□□□□ 0.82
VPS13AQ96RL7 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
VPS13AQ96RL7 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.15■□□□□ 0.82
VPS13AQ96RL7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC20.14■□□□□ 0.82
VPS13AQ96RL7 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.14■□□□□ 0.82
VPS13AQ96RL7 TSPY14P-201ENST00000303979 915 ntBASIC20.14■□□□□ 0.82
VPS13AQ96RL7 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
VPS13AQ96RL7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.14■□□□□ 0.82
VPS13AQ96RL7 AC004263.2-201ENST00000617183 678 ntBASIC20.14■□□□□ 0.82
VPS13AQ96RL7 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.14■□□□□ 0.82
VPS13AQ96RL7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
VPS13AQ96RL7 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.14■□□□□ 0.81
VPS13AQ96RL7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 NAPSB-206ENST00000562112 1266 ntBASIC20.13■□□□□ 0.81
VPS13AQ96RL7 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 SLC25A1P4-201ENST00000567977 778 ntBASIC20.13■□□□□ 0.81
VPS13AQ96RL7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS13AQ96RL7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 FAM207BP-201ENST00000447172 505 ntBASIC20.12■□□□□ 0.81
VPS13AQ96RL7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.12■□□□□ 0.81
VPS13AQ96RL7 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS13AQ96RL7 LIN28AP1-201ENST00000429574 405 ntBASIC20.11■□□□□ 0.81
VPS13AQ96RL7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms