Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC42Q96M95 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC42Q96M95 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC42Q96M95 KRT18P20-201ENST00000548986 1279 ntBASIC21.77■■□□□ 1.08
CCDC42Q96M95 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC42Q96M95 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CCDC42Q96M95 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CCDC42Q96M95 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC42Q96M95 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC42Q96M95 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC42Q96M95 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC42Q96M95 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 AC091799.1-201ENST00000422823 811 ntBASIC21.76■■□□□ 1.07
CCDC42Q96M95 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 AC105265.2-201ENST00000467189 838 ntBASIC21.76■■□□□ 1.07
CCDC42Q96M95 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC42Q96M95 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC42Q96M95 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC42Q96M95 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC42Q96M95 AC116562.4-201ENST00000641316 2276 ntBASIC21.76■■□□□ 1.07
CCDC42Q96M95 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 AL158211.5-201ENST00000623583 2518 ntBASIC21.75■■□□□ 1.07
CCDC42Q96M95 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 AC007322.3-201ENST00000426526 701 ntBASIC21.75■■□□□ 1.07
CCDC42Q96M95 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 AC243732.1-201ENST00000612648 864 ntBASIC21.75■■□□□ 1.07
CCDC42Q96M95 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC42Q96M95 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC42Q96M95 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 STX6-204ENST00000542060 4809 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 AC087289.5-201ENST00000586076 3175 ntBASIC21.74■■□□□ 1.07
CCDC42Q96M95 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC42Q96M95 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC42Q96M95 RBM17P2-201ENST00000616397 1405 ntBASIC21.73■■□□□ 1.07
CCDC42Q96M95 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 AC005837.3-201ENST00000612163 286 ntBASIC21.73■■□□□ 1.07
CCDC42Q96M95 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 AL691432.2-201ENST00000607222 2038 ntBASIC21.73■■□□□ 1.07
CCDC42Q96M95 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC42Q96M95 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC42Q96M95 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CCDC42Q96M95 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms