Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 AC006128.1-201ENST00000624704 1661 ntBASIC19.68■□□□□ 0.74
VPS50Q96JG6 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
VPS50Q96JG6 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
VPS50Q96JG6 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 TSPY6P-201ENST00000448518 926 ntBASIC19.67■□□□□ 0.74
VPS50Q96JG6 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 SLC7A5P2-201ENST00000553010 536 ntBASIC19.67■□□□□ 0.74
VPS50Q96JG6 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.67■□□□□ 0.74
VPS50Q96JG6 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
VPS50Q96JG6 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 CNN2P6-201ENST00000439038 900 ntBASIC19.66■□□□□ 0.74
VPS50Q96JG6 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 OR10C1-204ENST00000622521 1039 ntBASIC19.66■□□□□ 0.74
VPS50Q96JG6 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.66■□□□□ 0.74
VPS50Q96JG6 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VPS50Q96JG6 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS50Q96JG6 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS50Q96JG6 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VPS50Q96JG6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VPS50Q96JG6 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VPS50Q96JG6 AC105036.2-201ENST00000569468 176 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms