Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
SKA1Q96BD8 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SKA1Q96BD8 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 ESRRAP1-201ENST00000400596 1257 ntBASIC20.68■□□□□ 0.9
SKA1Q96BD8 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 AC093827.2-201ENST00000512654 315 ntBASIC20.68■□□□□ 0.9
SKA1Q96BD8 AC083880.1-201ENST00000608266 535 ntBASIC20.68■□□□□ 0.9
SKA1Q96BD8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.68■□□□□ 0.9
SKA1Q96BD8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SKA1Q96BD8 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 AC003102.1-202ENST00000563394 1796 ntBASIC20.67■□□□□ 0.9
SKA1Q96BD8 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 AL391422.3-201ENST00000603791 2761 ntBASIC20.67■□□□□ 0.9
SKA1Q96BD8 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 FAM21FP-204ENST00000608637 956 ntBASIC20.67■□□□□ 0.9
SKA1Q96BD8 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.67■□□□□ 0.9
SKA1Q96BD8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SKA1Q96BD8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.66■□□□□ 0.9
SKA1Q96BD8 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SKA1Q96BD8 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 AC006128.1-201ENST00000624704 1661 ntBASIC20.65■□□□□ 0.9
SKA1Q96BD8 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SKA1Q96BD8 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.65■□□□□ 0.9
SKA1Q96BD8 AC100791.3-201ENST00000617619 330 ntBASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms