Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.99■□□□□ 0.472e-7■■□□□ 13.9
DDX55Q8NHQ9 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.462e-7■■□□□ 13.9
DDX55Q8NHQ9 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.432e-6■■□□□ 13.9
DDX55Q8NHQ9 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.432e-7■■□□□ 13.9
DDX55Q8NHQ9 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.392e-6■■□□□ 13.9
DDX55Q8NHQ9 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.35■□□□□ 0.372e-7■■□□□ 13.9
DDX55Q8NHQ9 DAB2IP-203ENST00000373782 5193 ntAPPRIS ALT2 TSL 1 (best)16.87■□□□□ 0.292e-6■■□□□ 13.9
DDX55Q8NHQ9 TOM1-203ENST00000404284 2622 ntTSL 216.41■□□□□ 0.222e-7■■□□□ 13.9
DDX55Q8NHQ9 PEG10-204ENST00000493935 763 ntTSL 414.95□□□□□ -0.024e-17■■□□□ 13.9
DDX55Q8NHQ9 PEG10-208ENST00000615790 6394 ntTSL 1 (best) BASIC10.31□□□□□ -0.764e-17■■□□□ 13.9
DDX55Q8NHQ9 PEG10-206ENST00000612941 6392 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.854e-17■■□□□ 13.9
DDX55Q8NHQ9 PEG10-209ENST00000617526 6392 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.854e-17■■□□□ 13.9
DDX55Q8NHQ9 PEG10-202ENST00000482108 6618 ntTSL 1 (best) BASIC9.5□□□□□ -0.894e-17■■□□□ 13.9
DDX55Q8NHQ9 SUPT16H-207ENST00000557394 2324 ntTSL 211.06□□□□□ -0.644e-11■■□□□ 13.9
DDX55Q8NHQ9 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.894e-11■■□□□ 13.9
DDX55Q8NHQ9 SKIV2L-211ENST00000485349 734 ntTSL 221.17■□□□□ 0.982e-14■■□□□ 13.9
DDX55Q8NHQ9 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.348e-7■■□□□ 13.9
DDX55Q8NHQ9 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.128e-7■■□□□ 13.9
DDX55Q8NHQ9 PTPRK-207ENST00000368226 6087 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.21e-9■■□□□ 13.8
DDX55Q8NHQ9 PTPRK-221ENST00000532331 5757 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.471e-9■■□□□ 13.8
DDX55Q8NHQ9 PTPRK-205ENST00000368213 5816 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.611e-9■■□□□ 13.8
DDX55Q8NHQ9 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.246e-26■■□□□ 13.8
DDX55Q8NHQ9 CFL1-210ENST00000530945 1509 ntTSL 219.51■□□□□ 0.716e-26■■□□□ 13.8
DDX55Q8NHQ9 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.686e-26■■□□□ 13.8
DDX55Q8NHQ9 CFL1-207ENST00000527752 766 ntTSL 514.58□□□□□ -0.086e-26■■□□□ 13.8
DDX55Q8NHQ9 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.51e-11■■□□□ 13.8
DDX55Q8NHQ9 EIF4G1-230ENST00000460829 1804 ntTSL 222.49■■□□□ 1.199e-9■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-223ENST00000494397 1752 ntTSL 525.03■■□□□ 1.62e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC19.58■□□□□ 0.732e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-222ENST00000494302 2667 ntTSL 518.91■□□□□ 0.622e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-207ENST00000420383 2817 ntTSL 218.22■□□□□ 0.512e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-219ENST00000470209 2889 ntTSL 517.67■□□□□ 0.422e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-205ENST00000404127 3232 ntTSL 516.96■□□□□ 0.312e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.192e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.062e-8■■□□□ 13.8
DDX55Q8NHQ9 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.062e-8■■□□□ 13.8
DDX55Q8NHQ9 ARL2-203ENST00000529254 601 nt17.31■□□□□ 0.361e-25■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC30.12■■■□□ 2.415e-7■■□□□ 13.8
DDX55Q8NHQ9 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.865e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-202ENST00000355491 803 ntTSL 1 (best)26.18■■□□□ 1.785e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-204ENST00000585769 988 ntTSL 225.75■■□□□ 1.715e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC25.04■■□□□ 1.65e-7■■□□□ 13.8
DDX55Q8NHQ9 GNB2-212ENST00000470354 902 ntTSL 524.24■■□□□ 1.475e-7■■□□□ 13.8
DDX55Q8NHQ9 COA3-202ENST00000586680 1374 ntTSL 223.3■■□□□ 1.325e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC23.04■■□□□ 1.285e-7■■□□□ 13.8
DDX55Q8NHQ9 LMNB2-205ENST00000532465 769 ntTSL 323■■□□□ 1.275e-7■■□□□ 13.8
DDX55Q8NHQ9 GNB2-208ENST00000431068 910 ntTSL 521.85■■□□□ 1.095e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-206ENST00000586612 448 ntTSL 321.39■■□□□ 1.015e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC19.19■□□□□ 0.665e-7■■□□□ 13.8
DDX55Q8NHQ9 GNB2-204ENST00000412215 545 ntTSL 418.91■□□□□ 0.625e-7■■□□□ 13.8
DDX55Q8NHQ9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.485e-7■■□□□ 13.8
DDX55Q8NHQ9 GNB2-210ENST00000451587 887 ntTSL 517.97■□□□□ 0.475e-7■■□□□ 13.8
DDX55Q8NHQ9 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.465e-7■■□□□ 13.8
DDX55Q8NHQ9 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.81■□□□□ 0.449e-17■■□□□ 13.8
DDX55Q8NHQ9 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.265e-7■■□□□ 13.8
DDX55Q8NHQ9 LYRM4-204ENST00000463032 1487 ntTSL 1 (best)16■□□□□ 0.159e-17■■□□□ 13.8
DDX55Q8NHQ9 LYRM4-203ENST00000458438 941 ntTSL 215.7■□□□□ 0.19e-17■■□□□ 13.8
DDX55Q8NHQ9 LYRM4-205ENST00000464010 1401 ntTSL 3 BASIC15.23■□□□□ 0.039e-17■■□□□ 13.8
DDX55Q8NHQ9 VPS35-210ENST00000568784 4017 ntTSL 1 (best)15.03■□□□□ -05e-7■■□□□ 13.8
DDX55Q8NHQ9 COA3-201ENST00000328434 771 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.155e-7■■□□□ 13.8
DDX55Q8NHQ9 CTSC-201ENST00000227266 1921 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.322e-6■■□□□ 13.8
DDX55Q8NHQ9 ZWILCH-202ENST00000446801 3256 ntTSL 1 (best) BASIC12.45□□□□□ -0.425e-7■■□□□ 13.8
DDX55Q8NHQ9 ZWILCH-214ENST00000613446 3181 ntTSL 5 BASIC11.49□□□□□ -0.575e-7■■□□□ 13.8
DDX55Q8NHQ9 ZWILCH-201ENST00000307897 3960 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.685e-7■■□□□ 13.8
DDX55Q8NHQ9 LYRM4-201ENST00000330636 7312 ntAPPRIS P3 TSL 1 (best) BASIC10.02□□□□□ -0.819e-17■■□□□ 13.8
DDX55Q8NHQ9 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.275e-7■■□□□ 13.8
DDX55Q8NHQ9 CTSC-208ENST00000533897 4344 ntTSL 24.58□□□□□ -1.682e-6■■□□□ 13.8
DDX55Q8NHQ9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.165e-69■■□□□ 13.8
DDX55Q8NHQ9 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.48■□□□□ 0.715e-69■■□□□ 13.8
DDX55Q8NHQ9 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC26.85■■□□□ 1.894e-15■■□□□ 13.8
DDX55Q8NHQ9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.084e-15■■□□□ 13.8
DDX55Q8NHQ9 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC17.11■□□□□ 0.334e-15■■□□□ 13.8
DDX55Q8NHQ9 XRCC5-206ENST00000460284 2962 ntTSL 1 (best)5.93□□□□□ -1.469e-9■■□□□ 13.8
DDX55Q8NHQ9 ITM2C-210ENST00000620962 501 ntBASIC25.24■■□□□ 1.638e-9■■□□□ 13.8
DDX55Q8NHQ9 FXYD1-207ENST00000589121 512 ntTSL 322.58■■□□□ 1.215e-8■■□□□ 13.8
DDX55Q8NHQ9 FXYD1-203ENST00000587056 379 ntTSL 27.7□□□□□ -1.181e-8■■□□□ 13.8
DDX55Q8NHQ9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.912e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.05■□□□□ 0.482e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.42e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-206ENST00000436445 752 ntTSL 217.54■□□□□ 0.42e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-208ENST00000445961 944 ntTSL 517.54■□□□□ 0.42e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-211ENST00000484121 897 ntTSL 216.85■□□□□ 0.292e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-209ENST00000448962 2384 ntTSL 216.53■□□□□ 0.242e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC16.29■□□□□ 0.22e-20■■□□□ 13.8
DDX55Q8NHQ9 RPS9-212ENST00000495002 956 ntTSL 1 (best)14.66□□□□□ -0.062e-20■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC17.94■□□□□ 0.462e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC17.44■□□□□ 0.382e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.352e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.242e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.4■□□□□ 0.222e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.4■□□□□ 0.222e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16■□□□□ 0.152e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC15.93■□□□□ 0.142e-13■■□□□ 13.8
DDX55Q8NHQ9 TPD52L2-208ENST00000474176 4053 ntTSL 210.77□□□□□ -0.682e-13■■□□□ 13.8
DDX55Q8NHQ9 SLC2A3-209ENST00000543435 383 ntTSL 312.16□□□□□ -0.463e-17■■□□□ 13.8
DDX55Q8NHQ9 SLC2A3-205ENST00000486749 4414 ntTSL 1 (best)9.08□□□□□ -0.963e-17■■□□□ 13.8
DDX55Q8NHQ9 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC9.07□□□□□ -0.963e-17■■□□□ 13.8
DDX55Q8NHQ9 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC7.38□□□□□ -1.237e-10■■□□□ 13.8
DDX55Q8NHQ9 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.312e-9■■□□□ 13.8
DDX55Q8NHQ9 DNAJC5-202ENST00000470551 5287 ntTSL 215.7■□□□□ 0.12e-9■■□□□ 13.8
Retrieved 100 of 15,504 protein–RNA pairs in 111.6 ms