Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
BEST3Q8N1M1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
BEST3Q8N1M1 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.74■□□□□ 0.59
BEST3Q8N1M1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.74■□□□□ 0.59
BEST3Q8N1M1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 AL049796.1-201ENST00000565336 1766 ntBASIC18.73■□□□□ 0.59
BEST3Q8N1M1 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
BEST3Q8N1M1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 KRT17P3-201ENST00000420566 1262 ntBASIC18.72■□□□□ 0.59
BEST3Q8N1M1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
BEST3Q8N1M1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 AL121603.2-201ENST00000557373 2117 ntBASIC18.71■□□□□ 0.59
BEST3Q8N1M1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
BEST3Q8N1M1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.58
BEST3Q8N1M1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
BEST3Q8N1M1 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
BEST3Q8N1M1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms