Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4DQ86TL0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4DQ86TL0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
ATG4DQ86TL0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
ATG4DQ86TL0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
ATG4DQ86TL0 AL391422.3-201ENST00000603791 2761 ntBASIC18.36■□□□□ 0.53
ATG4DQ86TL0 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 AL355802.2-201ENST00000402069 882 ntBASIC18.36■□□□□ 0.53
ATG4DQ86TL0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
ATG4DQ86TL0 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 AC005181.1-201ENST00000604782 1256 ntBASIC18.35■□□□□ 0.53
ATG4DQ86TL0 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 OR10C1-204ENST00000622521 1039 ntBASIC18.35■□□□□ 0.53
ATG4DQ86TL0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
ATG4DQ86TL0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 CYP2T3P-201ENST00000601990 817 ntBASIC18.34■□□□□ 0.53
ATG4DQ86TL0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 AC105020.6-201ENST00000621523 1217 ntBASIC18.34■□□□□ 0.53
ATG4DQ86TL0 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
ATG4DQ86TL0 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 AC112907.3-201ENST00000577781 2400 ntBASIC18.33■□□□□ 0.53
ATG4DQ86TL0 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.33■□□□□ 0.53
ATG4DQ86TL0 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 KRT18P68-201ENST00000392293 1000 ntBASIC18.33■□□□□ 0.52
ATG4DQ86TL0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.33■□□□□ 0.52
ATG4DQ86TL0 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.32■□□□□ 0.52
ATG4DQ86TL0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms