Protein–RNA interactions for Protein: Q7Z7F7

MRPL55, 39S ribosomal protein L55, mitochondrial, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRPL55Q7Z7F7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
MRPL55Q7Z7F7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 KRT19P1-201ENST00000405746 1186 ntBASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
MRPL55Q7Z7F7 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
MRPL55Q7Z7F7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 LGR4-203ENST00000480977 492 ntTSL 2 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
MRPL55Q7Z7F7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms