Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
USP39Q53GS9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.56■□□□□ 0.88
USP39Q53GS9 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.56■□□□□ 0.88
USP39Q53GS9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.56■□□□□ 0.88
USP39Q53GS9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.56■□□□□ 0.88
USP39Q53GS9 AL023875.1-201ENST00000640777 796 ntBASIC20.56■□□□□ 0.88
USP39Q53GS9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.56■□□□□ 0.88
USP39Q53GS9 Z98882.1-201ENST00000622160 2253 ntBASIC20.56■□□□□ 0.88
USP39Q53GS9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
USP39Q53GS9 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
USP39Q53GS9 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
USP39Q53GS9 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USP39Q53GS9 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.55■□□□□ 0.88
USP39Q53GS9 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.55■□□□□ 0.88
USP39Q53GS9 AC239809.2-201ENST00000415381 517 ntBASIC20.55■□□□□ 0.88
USP39Q53GS9 AC133681.1-201ENST00000465482 601 ntBASIC20.55■□□□□ 0.88
USP39Q53GS9 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.55■□□□□ 0.88
USP39Q53GS9 AC124016.1-201ENST00000609552 612 ntBASIC20.55■□□□□ 0.88
USP39Q53GS9 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP39Q53GS9 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
USP39Q53GS9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
USP39Q53GS9 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
USP39Q53GS9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 AC005229.4-201ENST00000610085 2198 ntBASIC20.54■□□□□ 0.88
USP39Q53GS9 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USP39Q53GS9 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
USP39Q53GS9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
USP39Q53GS9 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 PGM5P4-201ENST00000421970 445 ntBASIC20.54■□□□□ 0.88
USP39Q53GS9 TSPY7P-201ENST00000431358 1114 ntBASIC20.54■□□□□ 0.88
USP39Q53GS9 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
USP39Q53GS9 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
USP39Q53GS9 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
USP39Q53GS9 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.54■□□□□ 0.88
USP39Q53GS9 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.54■□□□□ 0.88
USP39Q53GS9 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
USP39Q53GS9 AC120498.8-201ENST00000614275 531 ntBASIC20.54■□□□□ 0.88
USP39Q53GS9 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USP39Q53GS9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.54■□□□□ 0.88
USP39Q53GS9 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.53■□□□□ 0.88
USP39Q53GS9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.53■□□□□ 0.88
USP39Q53GS9 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.53■□□□□ 0.88
USP39Q53GS9 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.53■□□□□ 0.88
USP39Q53GS9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.53■□□□□ 0.88
USP39Q53GS9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 AL049637.2-201ENST00000641778 930 ntBASIC20.53■□□□□ 0.88
USP39Q53GS9 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
USP39Q53GS9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.53■□□□□ 0.88
USP39Q53GS9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
USP39Q53GS9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.53■□□□□ 0.88
USP39Q53GS9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.53■□□□□ 0.88
USP39Q53GS9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.52■□□□□ 0.88
USP39Q53GS9 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
USP39Q53GS9 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms