Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 ID1-201ENST00000376105 1233 ntBASIC18.47■□□□□ 0.55
CDH11P55287 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC18.47■□□□□ 0.55
CDH11P55287 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH11P55287 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.47■□□□□ 0.55
CDH11P55287 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC18.47■□□□□ 0.55
CDH11P55287 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.47■□□□□ 0.55
CDH11P55287 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
CDH11P55287 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CDH11P55287 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH11P55287 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
CDH11P55287 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH11P55287 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH11P55287 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.46■□□□□ 0.55
CDH11P55287 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH11P55287 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 AC092720.2-201ENST00000602388 1665 ntBASIC18.46■□□□□ 0.55
CDH11P55287 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH11P55287 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CDH11P55287 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.46■□□□□ 0.55
CDH11P55287 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.46■□□□□ 0.54
CDH11P55287 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDH11P55287 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH11P55287 CDCA4P2-201ENST00000441182 718 ntBASIC18.45■□□□□ 0.54
CDH11P55287 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC18.45■□□□□ 0.54
CDH11P55287 STX6-204ENST00000542060 4809 ntTSL 2 BASIC18.45■□□□□ 0.54
CDH11P55287 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDH11P55287 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDH11P55287 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CDH11P55287 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
CDH11P55287 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CDH11P55287 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 RNF165-205ENST00000588679 2904 ntBASIC18.44■□□□□ 0.54
CDH11P55287 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH11P55287 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH11P55287 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH11P55287 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.44■□□□□ 0.54
CDH11P55287 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CDH11P55287 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 AC011767.1-201ENST00000617410 1153 ntBASIC18.44■□□□□ 0.54
CDH11P55287 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.44■□□□□ 0.54
CDH11P55287 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CDH11P55287 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDH11P55287 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 AC061975.6-201ENST00000579045 1553 ntBASIC18.43■□□□□ 0.54
CDH11P55287 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH11P55287 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 AC026185.1-201ENST00000445748 174 ntBASIC18.43■□□□□ 0.54
CDH11P55287 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
CDH11P55287 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
CDH11P55287 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.43■□□□□ 0.54
CDH11P55287 AC053503.5-201ENST00000601508 636 ntBASIC18.43■□□□□ 0.54
CDH11P55287 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
CDH11P55287 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CDH11P55287 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CDH11P55287 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms