Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.05■□□□□ 0.96
PTPN9P43378 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
PTPN9P43378 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.05■□□□□ 0.96
PTPN9P43378 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
PTPN9P43378 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 AC092118.2-201ENST00000613495 667 ntBASIC21.05■□□□□ 0.96
PTPN9P43378 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.05■□□□□ 0.96
PTPN9P43378 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PTPN9P43378 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.04■□□□□ 0.96
PTPN9P43378 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC21.04■□□□□ 0.96
PTPN9P43378 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.04■□□□□ 0.96
PTPN9P43378 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC21.04■□□□□ 0.96
PTPN9P43378 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.04■□□□□ 0.96
PTPN9P43378 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.04■□□□□ 0.96
PTPN9P43378 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.04■□□□□ 0.96
PTPN9P43378 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN9P43378 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PTPN9P43378 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
PTPN9P43378 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN9P43378 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN9P43378 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.03■□□□□ 0.96
PTPN9P43378 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PTPN9P43378 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC21.03■□□□□ 0.96
PTPN9P43378 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN9P43378 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN9P43378 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PTPN9P43378 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN9P43378 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.02■□□□□ 0.96
PTPN9P43378 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.02■□□□□ 0.96
PTPN9P43378 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PTPN9P43378 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.02■□□□□ 0.96
PTPN9P43378 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.02■□□□□ 0.96
PTPN9P43378 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN9P43378 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.02■□□□□ 0.96
PTPN9P43378 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.02■□□□□ 0.96
PTPN9P43378 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PTPN9P43378 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.02■□□□□ 0.96
PTPN9P43378 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.02■□□□□ 0.95
PTPN9P43378 AC099778.1-201ENST00000568593 1911 ntBASIC21.02■□□□□ 0.95
PTPN9P43378 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PTPN9P43378 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC21.01■□□□□ 0.95
PTPN9P43378 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.01■□□□□ 0.95
PTPN9P43378 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.01■□□□□ 0.95
PTPN9P43378 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN9P43378 AL109923.1-201ENST00000618799 583 ntBASIC21.01■□□□□ 0.95
PTPN9P43378 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN9P43378 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
PTPN9P43378 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN9P43378 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PTPN9P43378 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21■□□□□ 0.95
PTPN9P43378 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PTPN9P43378 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PTPN9P43378 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms