Protein–RNA interactions for Protein: P40318

SSM4, ERAD-associated E3 ubiquitin-protein ligase DOA10, yeastyeast

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSM4P40318 ATG9YDL149W 2994 nt2.21□□□□□ -2.06
SSM4P40318 SBE22YHR103W 2559 nt2.21□□□□□ -2.06
SSM4P40318 SLM1YIL105C 2061 nt2.21□□□□□ -2.06
SSM4P40318 YBR184WYBR184W 1572 nt2.2□□□□□ -2.06
SSM4P40318 YKL165C-AYKL165C-A 234 nt2.2□□□□□ -2.06
SSM4P40318 YAL068W-AYAL068W-A 255 nt2.2□□□□□ -2.06
SSM4P40318 BSC3YLR465C 309 nt2.2□□□□□ -2.06
SSM4P40318 MGA2YIR033W 3342 nt2.2□□□□□ -2.06
SSM4P40318 GNT1YOR320C 1476 nt2.2□□□□□ -2.06
SSM4P40318 YOR293C-AYOR293C-A 150 nt2.19□□□□□ -2.06
SSM4P40318 PAN3YKL025C 2040 nt2.19□□□□□ -2.06
SSM4P40318 RPH1YER169W 2391 nt2.19□□□□□ -2.06
SSM4P40318 YCR087C-AYCR087C-A 462 nt2.18□□□□□ -2.06
SSM4P40318 BTT1YDR252W 450 nt2.18□□□□□ -2.06
SSM4P40318 CAT2YML042W 2013 nt2.18□□□□□ -2.06
SSM4P40318 SSK2YNR031C 4740 nt2.18□□□□□ -2.06
SSM4P40318 SAC3YDR159W 3906 nt2.18□□□□□ -2.06
SSM4P40318 HMRA1YCR097W 381 nt2.17□□□□□ -2.06
SSM4P40318 YDL011CYDL011C 324 nt2.17□□□□□ -2.06
SSM4P40318 NAM7YMR080C 2916 nt2.17□□□□□ -2.06
SSM4P40318 TOF2YKR010C 2316 nt2.17□□□□□ -2.06
SSM4P40318 DAS1YJL149W 1992 nt2.17□□□□□ -2.06
SSM4P40318 YIL066W-AYIL066W-A 444 nt2.17□□□□□ -2.06
SSM4P40318 YPR170W-AYPR170W-A 186 nt2.17□□□□□ -2.06
SSM4P40318 YHR214C-BYHR214C-B 5382 nt2.16□□□□□ -2.06
SSM4P40318 USO1YDL058W 5373 nt2.16□□□□□ -2.06
SSM4P40318 WIP1YDR374W-A 270 nt2.16□□□□□ -2.06
SSM4P40318 SNF5YBR289W 2718 nt2.15□□□□□ -2.06
SSM4P40318 RPA34YJL148W 702 nt2.15□□□□□ -2.07
SSM4P40318 YKL183C-AYKL183C-A 213 nt2.15□□□□□ -2.07
SSM4P40318 CDC31YOR257W 486 nt2.15□□□□□ -2.07
SSM4P40318 YCR102W-AYCR102W-A 198 nt2.14□□□□□ -2.07
SSM4P40318 YDR008CYDR008C 351 nt2.14□□□□□ -2.07
SSM4P40318 PDR8YLR266C 2106 nt2.14□□□□□ -2.07
SSM4P40318 CGI121YML036W 546 nt2.14□□□□□ -2.07
SSM4P40318 PET309YLR067C 2898 nt2.13□□□□□ -2.07
SSM4P40318 CFT2YLR115W 2580 nt2.13□□□□□ -2.07
SSM4P40318 MEC1YBR136W 7107 nt2.12□□□□□ -2.07
SSM4P40318 UTP21YLR409C 2820 nt2.12□□□□□ -2.07
SSM4P40318 SEY1YOR165W 2331 nt2.12□□□□□ -2.07
SSM4P40318 LAA1YJL207C 6045 nt2.12□□□□□ -2.07
SSM4P40318 YER088C-AYER088C-A 324 nt2.12□□□□□ -2.07
SSM4P40318 RPL9BYNL067W 576 nt2.12□□□□□ -2.07
SSM4P40318 YNL114CYNL114C 372 nt2.12□□□□□ -2.07
SSM4P40318 RPL32YBL092W 393 nt2.12□□□□□ -2.07
SSM4P40318 AGC1YPR021C 2709 nt2.1□□□□□ -2.07
SSM4P40318 CHC1YGL206C 4962 nt2.1□□□□□ -2.07
SSM4P40318 YHR028W-AYHR028W-A 321 nt2.1□□□□□ -2.07
SSM4P40318 YLR334CYLR334C 381 nt2.1□□□□□ -2.07
SSM4P40318 CCH1YGR217W 6120 nt2.1□□□□□ -2.07
SSM4P40318 TIM13YGR181W 318 nt2.09□□□□□ -2.08
SSM4P40318 RPL42BYHR141C 321 nt2.09□□□□□ -2.08
SSM4P40318 YAR047CYAR047C 321 nt2.09□□□□□ -2.08
SSM4P40318 YML003WYML003W 873 nt2.09□□□□□ -2.08
SSM4P40318 RPL42AYNL162W 321 nt2.09□□□□□ -2.08
SSM4P40318 TBS1YBR150C 3285 nt2.08□□□□□ -2.08
SSM4P40318 LRE1YCL051W 1752 nt2.08□□□□□ -2.08
SSM4P40318 MSH3YCR092C 3057 nt2.08□□□□□ -2.08
SSM4P40318 YHL046W-AYHL046W-A 327 nt2.08□□□□□ -2.08
SSM4P40318 YJL020W-AYJL020W-A 258 nt2.08□□□□□ -2.08
SSM4P40318 HUG1YML058W-A 207 nt2.08□□□□□ -2.08
SSM4P40318 YBL073WYBL073W 312 nt2.08□□□□□ -2.08
SSM4P40318 YOR121CYOR121C 306 nt2.08□□□□□ -2.08
SSM4P40318 YOR093CYOR093C 4947 nt2.08□□□□□ -2.08
SSM4P40318 HCS1YKL017C 2052 nt2.07□□□□□ -2.08
SSM4P40318 ATG31YDR022C 591 nt2.07□□□□□ -2.08
SSM4P40318 YAP6YDR259C 1152 nt2.07□□□□□ -2.08
SSM4P40318 ABM1YJR108W 372 nt2.07□□□□□ -2.08
SSM4P40318 AIM9YER080W 1884 nt2.07□□□□□ -2.08
SSM4P40318 PIP2YOR363C 2991 nt2.06□□□□□ -2.08
SSM4P40318 MSH6YDR097C 3729 nt2.06□□□□□ -2.08
SSM4P40318 snR56snR56 88 nt2.06□□□□□ -2.08
SSM4P40318 YER137W-AYER137W-A 306 nt2.06□□□□□ -2.08
SSM4P40318 YIL102CYIL102C 306 nt2.06□□□□□ -2.08
SSM4P40318 PHS1YJL097W 654 nt2.06□□□□□ -2.08
SSM4P40318 TFC8YPL007C 1767 nt2.05□□□□□ -2.08
SSM4P40318 HIT1YJR055W 495 nt2.05□□□□□ -2.08
SSM4P40318 PAU18YLL064C 363 nt2.05□□□□□ -2.08
SSM4P40318 PAU6YNR076W 363 nt2.05□□□□□ -2.08
SSM4P40318 HHT1YBR010W 411 nt2.05□□□□□ -2.08
SSM4P40318 MSC6YOR354C 2079 nt2.05□□□□□ -2.08
SSM4P40318 DFG16YOR030W 1860 nt2.04□□□□□ -2.08
SSM4P40318 tQ(UUG)E2tQ(UUG)E2 72 nt2.04□□□□□ -2.08
SSM4P40318 RPS27AYKL156W 249 nt2.04□□□□□ -2.08
SSM4P40318 ISF1YMR081C 1017 nt2.04□□□□□ -2.08
SSM4P40318 HDA3YPR179C 1968 nt2.04□□□□□ -2.08
SSM4P40318 YGR250CYGR250C 2346 nt2.04□□□□□ -2.08
SSM4P40318 YBP1YBR216C 2025 nt2.04□□□□□ -2.08
SSM4P40318 IRA1YBR140C 9279 nt2.03□□□□□ -2.08
SSM4P40318 RPL26AYLR344W 384 nt2.03□□□□□ -2.08
SSM4P40318 FMP23YBR047W 528 nt2.03□□□□□ -2.08
SSM4P40318 YPL229WYPL229W 621 nt2.03□□□□□ -2.08
SSM4P40318 HIR3YJR140C 4947 nt2.03□□□□□ -2.08
SSM4P40318 OSH6YKR003W 1347 nt2.03□□□□□ -2.08
SSM4P40318 SEC63YOR254C 1992 nt2.03□□□□□ -2.09
SSM4P40318 PCF11YDR228C 1881 nt2.02□□□□□ -2.09
SSM4P40318 STF2YGR008C 255 nt2.02□□□□□ -2.09
SSM4P40318 YGR265WYGR265W 411 nt2.02□□□□□ -2.09
SSM4P40318 MCM22YJR135C 720 nt2.02□□□□□ -2.09
SSM4P40318 YLR146W-AYLR146W-A 189 nt2.02□□□□□ -2.09
Retrieved 100 of 7,029 protein–RNA pairs in 101 ms