Protein–RNA interactions for Protein: P38854

TDA11, Topoisomerase I damage affected protein 11, yeastyeast

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TDA11P38854 YDR008CYDR008C 351 nt1.3□□□□□ -2.2
TDA11P38854 HUR1YGL168W 333 nt1.3□□□□□ -2.2
TDA11P38854 YOL159CYOL159C 516 nt1.3□□□□□ -2.2
TDA11P38854 DGR2YKL121W 2559 nt1.3□□□□□ -2.2
TDA11P38854 YNL284C-BYNL284C-B 5268 nt1.3□□□□□ -2.2
TDA11P38854 EST2YLR318W 2655 nt1.29□□□□□ -2.2
TDA11P38854 MDS3YGL197W 4464 nt1.29□□□□□ -2.2
TDA11P38854 YDR509WYDR509W 348 nt1.29□□□□□ -2.2
TDA11P38854 RPL42BYHR141C 321 nt1.29□□□□□ -2.2
TDA11P38854 EMC5YIL027C 426 nt1.29□□□□□ -2.2
TDA11P38854 RPL40BYKR094C 387 nt1.29□□□□□ -2.2
TDA11P38854 RPL42AYNL162W 321 nt1.29□□□□□ -2.2
TDA11P38854 YPR153WYPR153W 423 nt1.29□□□□□ -2.2
TDA11P38854 CAT8YMR280C 4302 nt1.29□□□□□ -2.2
TDA11P38854 YAP3YHL009C 993 nt1.28□□□□□ -2.2
TDA11P38854 CIC1YHR052W 1131 nt1.28□□□□□ -2.2
TDA11P38854 EGD1YPL037C 474 nt1.28□□□□□ -2.2
TDA11P38854 ZRG17YNR039C 1818 nt1.28□□□□□ -2.2
TDA11P38854 HDA3YPR179C 1968 nt1.27□□□□□ -2.21
TDA11P38854 MVP1YMR004W 1536 nt1.27□□□□□ -2.21
TDA11P38854 RVS161YCR009C 798 nt1.27□□□□□ -2.21
TDA11P38854 RPL9AYGL147C 576 nt1.27□□□□□ -2.21
TDA11P38854 PAN3YKL025C 2040 nt1.27□□□□□ -2.21
TDA11P38854 EMC4YGL231C 573 nt1.26□□□□□ -2.21
TDA11P38854 NOP15YNL110C 663 nt1.26□□□□□ -2.21
TDA11P38854 FMP23YBR047W 528 nt1.26□□□□□ -2.21
TDA11P38854 MAD1YGL086W 2250 nt1.26□□□□□ -2.21
TDA11P38854 SEC21YNL287W 2808 nt1.25□□□□□ -2.21
TDA11P38854 NUT1YGL151W 3399 nt1.25□□□□□ -2.21
TDA11P38854 APQ13YJL075C 417 nt1.25□□□□□ -2.21
TDA11P38854 HUG1YML058W-A 207 nt1.25□□□□□ -2.21
TDA11P38854 YBR032WYBR032W 303 nt1.25□□□□□ -2.21
TDA11P38854 DCP2YNL118C 2913 nt1.25□□□□□ -2.21
TDA11P38854 tH(GUG)E1tH(GUG)E1 72 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)E2tH(GUG)E2 72 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)G1tH(GUG)G1 72 nt1.24□□□□□ -2.21
TDA11P38854 YER023C-AYER023C-A 213 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)G2tH(GUG)G2 72 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)HtH(GUG)H 72 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)KtH(GUG)K 72 nt1.24□□□□□ -2.21
TDA11P38854 tH(GUG)MtH(GUG)M 72 nt1.24□□□□□ -2.21
TDA11P38854 YGR025WYGR025W 303 nt1.24□□□□□ -2.21
TDA11P38854 HIT1YJR055W 495 nt1.24□□□□□ -2.21
TDA11P38854 snR13snR13 124 nt1.24□□□□□ -2.21
TDA11P38854 RPL33BYOR234C 324 nt1.24□□□□□ -2.21
TDA11P38854 ROM2YLR371W 4071 nt1.24□□□□□ -2.21
TDA11P38854 SPC98YNL126W 2541 nt1.23□□□□□ -2.21
TDA11P38854 MTC7YEL033W 420 nt1.23□□□□□ -2.21
TDA11P38854 UFD2YDL190C 2886 nt1.23□□□□□ -2.21
TDA11P38854 MSS11YMR164C 2277 nt1.23□□□□□ -2.21
TDA11P38854 YGR130CYGR130C 2451 nt1.23□□□□□ -2.21
TDA11P38854 TTI1YKL033W 3117 nt1.22□□□□□ -2.21
TDA11P38854 HMLALPHA2YCL067C 633 nt1.22□□□□□ -2.21
TDA11P38854 MATALPHA2YCR039C 633 nt1.22□□□□□ -2.21
TDA11P38854 YDR003W-AYDR003W-A 123 nt1.22□□□□□ -2.21
TDA11P38854 STF2YGR008C 255 nt1.22□□□□□ -2.21
TDA11P38854 YSY6YBR162W-A 198 nt1.22□□□□□ -2.21
TDA11P38854 MAK10YEL053C 2202 nt1.21□□□□□ -2.21
TDA11P38854 RTT102YGR275W 474 nt1.21□□□□□ -2.22
TDA11P38854 YJL015CYJL015C 285 nt1.21□□□□□ -2.22
TDA11P38854 YOP1YPR028W 543 nt1.21□□□□□ -2.22
TDA11P38854 YER084W-AYER084W-A 513 nt1.2□□□□□ -2.22
TDA11P38854 MLH3YPL164C 2148 nt1.2□□□□□ -2.22
TDA11P38854 ENV11YGR071C 2583 nt1.2□□□□□ -2.22
TDA11P38854 NUP145YGL092W 3954 nt1.2□□□□□ -2.22
TDA11P38854 TOF2YKR010C 2316 nt1.2□□□□□ -2.22
TDA11P38854 YGL217CYGL217C 342 nt1.19□□□□□ -2.22
TDA11P38854 YHL009W-AYHL009W-A 1242 nt1.19□□□□□ -2.22
TDA11P38854 BIG1YHR101C 1008 nt1.19□□□□□ -2.22
TDA11P38854 YHR139C-AYHR139C-A 312 nt1.19□□□□□ -2.22
TDA11P38854 RRT15YLR162W-A 189 nt1.19□□□□□ -2.22
TDA11P38854 GPI15YNL038W 690 nt1.19□□□□□ -2.22
TDA11P38854 YOR376WYOR376W 369 nt1.19□□□□□ -2.22
TDA11P38854 SPO23YBR250W 1572 nt1.19□□□□□ -2.22
TDA11P38854 SMC4YLR086W 4257 nt1.18□□□□□ -2.22
TDA11P38854 NUP188YML103C 4968 nt1.18□□□□□ -2.22
TDA11P38854 NST1YNL091W 3723 nt1.18□□□□□ -2.22
TDA11P38854 PAU2YEL049W 363 nt1.18□□□□□ -2.22
TDA11P38854 EAF6YJR082C 342 nt1.18□□□□□ -2.22
TDA11P38854 YML009C-AYML009C-A 327 nt1.18□□□□□ -2.22
TDA11P38854 RPL32YBL092W 393 nt1.18□□□□□ -2.22
TDA11P38854 GAL7YBR018C 1101 nt1.18□□□□□ -2.22
TDA11P38854 TIM18YOR297C 579 nt1.18□□□□□ -2.22
TDA11P38854 YBR071WYBR071W 636 nt1.18□□□□□ -2.22
TDA11P38854 YBR076C-AYBR076C-A 267 nt1.18□□□□□ -2.22
TDA11P38854 MSH3YCR092C 3057 nt1.18□□□□□ -2.22
TDA11P38854 RAD9YDR217C 3930 nt1.18□□□□□ -2.22
TDA11P38854 YCR001WYCR001W 315 nt1.17□□□□□ -2.22
TDA11P38854 MXR1YER042W 555 nt1.17□□□□□ -2.22
TDA11P38854 CDC39YCR093W 6327 nt1.17□□□□□ -2.22
TDA11P38854 PAC1YOR269W 1485 nt1.17□□□□□ -2.22
TDA11P38854 SWI5YDR146C 2130 nt1.16□□□□□ -2.22
TDA11P38854 RTR1YER139C 681 nt1.16□□□□□ -2.22
TDA11P38854 NFU1YKL040C 771 nt1.16□□□□□ -2.22
TDA11P38854 PBI2YNL015W 228 nt1.16□□□□□ -2.22
TDA11P38854 YOR161W-BYOR161W-B 261 nt1.16□□□□□ -2.22
TDA11P38854 PXA2YKL188C 2562 nt1.16□□□□□ -2.22
TDA11P38854 SWI4YER111C 3282 nt1.16□□□□□ -2.22
TDA11P38854 RSM22YKL155C 1887 nt1.16□□□□□ -2.22
TDA11P38854 BEM2YER155C 6504 nt1.15□□□□□ -2.22
Retrieved 100 of 7,029 protein–RNA pairs in 24.5 ms