Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
USF1P22415 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.11■□□□□ 0.33
USF1P22415 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.11■□□□□ 0.33
USF1P22415 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.11■□□□□ 0.33
USF1P22415 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
USF1P22415 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
USF1P22415 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.1■□□□□ 0.33
USF1P22415 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
USF1P22415 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 POM121L13P-201ENST00000422362 380 ntBASIC17.1■□□□□ 0.33
USF1P22415 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC17.1■□□□□ 0.33
USF1P22415 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
USF1P22415 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
USF1P22415 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
USF1P22415 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.09■□□□□ 0.33
USF1P22415 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USF1P22415 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC17.09■□□□□ 0.33
USF1P22415 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USF1P22415 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.09■□□□□ 0.33
USF1P22415 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC17.09■□□□□ 0.33
USF1P22415 C2orf69P4-201ENST00000565394 541 ntBASIC17.09■□□□□ 0.33
USF1P22415 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
USF1P22415 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC17.09■□□□□ 0.33
USF1P22415 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
USF1P22415 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.09■□□□□ 0.33
USF1P22415 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC17.09■□□□□ 0.33
USF1P22415 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
USF1P22415 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.09■□□□□ 0.33
USF1P22415 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USF1P22415 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
USF1P22415 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC17.08■□□□□ 0.32
USF1P22415 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.08■□□□□ 0.32
USF1P22415 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.08■□□□□ 0.32
USF1P22415 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 PGM5P4-201ENST00000421970 445 ntBASIC17.08■□□□□ 0.32
USF1P22415 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.08■□□□□ 0.32
USF1P22415 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
USF1P22415 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.08■□□□□ 0.32
USF1P22415 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.08■□□□□ 0.32
USF1P22415 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.08■□□□□ 0.32
USF1P22415 AC233263.1-201ENST00000578059 224 ntBASIC17.08■□□□□ 0.32
USF1P22415 MIR4497-201ENST00000583208 89 ntBASIC17.08■□□□□ 0.32
USF1P22415 PALM-208ENST00000592155 2272 ntTSL 4 BASIC17.08■□□□□ 0.32
USF1P22415 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
USF1P22415 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.07■□□□□ 0.32
USF1P22415 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC17.07■□□□□ 0.32
USF1P22415 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
USF1P22415 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
USF1P22415 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
USF1P22415 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC17.07■□□□□ 0.32
USF1P22415 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.07■□□□□ 0.32
USF1P22415 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms