Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATF4P18848 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATF4P18848 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
ATF4P18848 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATF4P18848 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATF4P18848 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.29
ATF4P18848 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
ATF4P18848 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 MTURN-203ENST00000409688 843 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 TSPY9P-201ENST00000440215 945 ntBASIC16.83■□□□□ 0.28
ATF4P18848 TSPY11P-201ENST00000442607 1045 ntBASIC16.83■□□□□ 0.28
ATF4P18848 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC16.83■□□□□ 0.28
ATF4P18848 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC16.83■□□□□ 0.28
ATF4P18848 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC16.83■□□□□ 0.28
ATF4P18848 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
ATF4P18848 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
ATF4P18848 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.82■□□□□ 0.28
ATF4P18848 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC16.82■□□□□ 0.28
ATF4P18848 AC010997.5-201ENST00000609182 354 ntBASIC16.82■□□□□ 0.28
ATF4P18848 MIR6724-1-201ENST00000616420 92 ntBASIC16.82■□□□□ 0.28
ATF4P18848 MIR6724-2-201ENST00000616483 92 ntBASIC16.82■□□□□ 0.28
ATF4P18848 MIR6724-4-201ENST00000617390 92 ntBASIC16.82■□□□□ 0.28
ATF4P18848 MIR6724-3-201ENST00000622482 92 ntBASIC16.82■□□□□ 0.28
ATF4P18848 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
ATF4P18848 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
ATF4P18848 TNRC18P3-201ENST00000441896 2691 ntBASIC16.82■□□□□ 0.28
ATF4P18848 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
ATF4P18848 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATF4P18848 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.81■□□□□ 0.28
ATF4P18848 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
ATF4P18848 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
ATF4P18848 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATF4P18848 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
ATF4P18848 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.8■□□□□ 0.28
ATF4P18848 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
ATF4P18848 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 AC073314.1-201ENST00000568729 2216 ntBASIC16.8■□□□□ 0.28
ATF4P18848 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 EXOG-217ENST00000630638 197 ntTSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
ATF4P18848 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
ATF4P18848 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.8■□□□□ 0.28
ATF4P18848 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms