Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PAPOLA-215ENST00000555626 2272 ntTSL 1 (best)4.58□□□□□ -1.681e-6■■■□□ 16.3
YBX3P16989 ATXN10-211ENST00000498009 873 ntTSL 527.6■■■□□ 2.015e-9■■■□□ 16.3
YBX3P16989 ATXN10-212ENST00000640901 1185 ntTSL 5 BASIC16.39■□□□□ 0.215e-9■■■□□ 16.3
YBX3P16989 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC21.09■□□□□ 0.972e-7■■■□□ 16.3
YBX3P16989 DFFA-203ENST00000476658 744 ntTSL 319.39■□□□□ 0.692e-7■■■□□ 16.3
YBX3P16989 DFFA-202ENST00000377038 6032 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.212e-7■■■□□ 16.3
YBX3P16989 RNF181-202ENST00000414390 327 ntTSL 212.91□□□□□ -0.343e-13■■■□□ 16.3
YBX3P16989 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.726e-8■■■□□ 16.3
YBX3P16989 FADS1-209ENST00000491310 525 ntTSL 517.05■□□□□ 0.323e-13■■■□□ 16.3
YBX3P16989 DDB1-206ENST00000535283 1220 ntTSL 212.78□□□□□ -0.365e-9■■■□□ 16.3
YBX3P16989 CSNK1G2-211ENST00000615564 964 ntTSL 525.32■■□□□ 1.645e-7■■■□□ 16.2
YBX3P16989 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC22.2■■□□□ 1.151e-7■■■□□ 16.2
YBX3P16989 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.49■□□□□ 0.556e-7■■■□□ 16.2
YBX3P16989 FOXRED1-203ENST00000525083 1228 ntTSL 222.65■■□□□ 1.225e-6■■■□□ 16.2
YBX3P16989 PLOD1-202ENST00000358133 819 ntTSL 319.09■□□□□ 0.652e-9■■■□□ 16.2
YBX3P16989 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.093e-6■■■□□ 16.2
YBX3P16989 IFT52-204ENST00000461012 399 ntTSL 28.52□□□□□ -1.053e-6■■■□□ 16.2
YBX3P16989 IFT52-207ENST00000471199 749 ntTSL 27.42□□□□□ -1.223e-6■■■□□ 16.2
YBX3P16989 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC7□□□□□ -1.293e-6■■■□□ 16.2
YBX3P16989 EIF2S1-206ENST00000557310 999 ntTSL 217.66■□□□□ 0.421e-7■■■□□ 16.2
YBX3P16989 SF3A3-203ENST00000461869 776 ntTSL 321.31■■□□□ 11e-7■■■□□ 16.2
YBX3P16989 SF3A3-204ENST00000462258 527 ntTSL 213.51□□□□□ -0.251e-7■■■□□ 16.2
YBX3P16989 SF3A3-205ENST00000470585 704 ntTSL 39.71□□□□□ -0.861e-7■■■□□ 16.2
YBX3P16989 SF3A3-208ENST00000489537 891 ntTSL 47.66□□□□□ -1.181e-7■■■□□ 16.2
YBX3P16989 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.288e-9■■■□□ 16.2
YBX3P16989 HACD3-212ENST00000624437 2746 nt9.07□□□□□ -0.961e-7■■■□□ 16.2
YBX3P16989 DNTTIP2-203ENST00000460191 3084 ntTSL 215.93■□□□□ 0.142e-6■■■□□ 16.2
YBX3P16989 DNTTIP2-201ENST00000359208 2199 ntTSL 28.86□□□□□ -0.992e-6■■■□□ 16.2
YBX3P16989 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.432e-6■■■□□ 16.2
YBX3P16989 EFHC1-204ENST00000491749 496 ntTSL 432.16■■■□□ 2.744e-6■■■□□ 16.2
YBX3P16989 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC23.38■■□□□ 1.334e-6■■■□□ 16.2
YBX3P16989 KNOP1-203ENST00000565844 1394 ntTSL 519.5■□□□□ 0.712e-6■■■□□ 16.2
YBX3P16989 EFHC1-235ENST00000637849 2746 ntTSL 518.38■□□□□ 0.534e-6■■■□□ 16.2
YBX3P16989 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.71■□□□□ 0.422e-7■■■□□ 16.2
YBX3P16989 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.58■□□□□ 0.254e-6■■■□□ 16.2
YBX3P16989 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.134e-6■■■□□ 16.2
YBX3P16989 KNOP1-201ENST00000219837 6432 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.62e-6■■■□□ 16.2
YBX3P16989 PAQR8-201ENST00000360726 4655 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.684e-6■■■□□ 16.2
YBX3P16989 SEPT11-208ENST00000506731 659 ntTSL 58.34□□□□□ -1.072e-9■■■□□ 16.2
YBX3P16989 SEPT11-202ENST00000502401 276 ntTSL 56.38□□□□□ -1.392e-9■■■□□ 16.2
YBX3P16989 SEPT11-216ENST00000515671 507 ntTSL 26.13□□□□□ -1.432e-9■■■□□ 16.2
YBX3P16989 SEPT11-215ENST00000513697 328 ntTSL 25.9□□□□□ -1.462e-9■■■□□ 16.2
YBX3P16989 SEPT11-214ENST00000513373 546 ntTSL 25.63□□□□□ -1.512e-9■■■□□ 16.2
YBX3P16989 RRP1B-202ENST00000470886 4634 ntTSL 210.7□□□□□ -0.71e-9■■■□□ 16.2
YBX3P16989 SCFD1-224ENST00000557713 556 ntTSL 422.02■■□□□ 1.126e-7■■■□□ 16.2
YBX3P16989 SCFD1-210ENST00000553693 490 ntTSL 38.06□□□□□ -1.126e-7■■■□□ 16.2
YBX3P16989 SCFD1-223ENST00000557076 743 ntTSL 36.98□□□□□ -1.296e-7■■■□□ 16.2
YBX3P16989 SCFD1-213ENST00000554776 583 ntTSL 54.74□□□□□ -1.656e-7■■■□□ 16.2
YBX3P16989 GTSF1-203ENST00000546739 567 ntTSL 46.67□□□□□ -1.344e-11■■■□□ 16.2
YBX3P16989 ZFHX3-203ENST00000397992 13841 ntTSL 1 (best) BASIC9.16□□□□□ -0.941e-6■■■□□ 16.2
YBX3P16989 ZFHX3-201ENST00000268489 16064 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.981e-6■■■□□ 16.2
YBX3P16989 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC7.64□□□□□ -1.191e-6■■■□□ 16.2
YBX3P16989 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.412e-6■■■□□ 16.2
YBX3P16989 TNPO2-212ENST00000588491 737 ntTSL 522.32■■□□□ 1.167e-12■■■□□ 16.2
YBX3P16989 TNPO2-215ENST00000589572 586 ntTSL 314.62□□□□□ -0.077e-12■■■□□ 16.2
YBX3P16989 QARS-252ENST00000637908 637 ntTSL 518.9■□□□□ 0.625e-12■■■□□ 16.2
YBX3P16989 ARF5-205ENST00000467281 567 ntTSL 428.49■■■□□ 2.153e-9■■■□□ 16.2
YBX3P16989 ARF5-203ENST00000459680 466 ntTSL 1 (best)12.47□□□□□ -0.413e-9■■■□□ 16.2
YBX3P16989 MTCH2-205ENST00000534074 811 ntTSL 25.49□□□□□ -1.532e-7■■■□□ 16.2
YBX3P16989 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.632e-11■■■□□ 16.2
YBX3P16989 SLC38A5-209ENST00000497336 493 ntTSL 518.75■□□□□ 0.592e-11■■■□□ 16.2
YBX3P16989 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.212e-11■■■□□ 16.2
YBX3P16989 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.25■□□□□ 0.032e-11■■■□□ 16.2
YBX3P16989 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.25■□□□□ 0.032e-11■■■□□ 16.2
YBX3P16989 GANAB-216ENST00000540933 3836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.562e-11■■■□□ 16.2
YBX3P16989 GANAB-211ENST00000532402 3718 ntTSL 1 (best)11.39□□□□□ -0.592e-11■■■□□ 16.2
YBX3P16989 GANAB-201ENST00000346178 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.672e-11■■■□□ 16.2
YBX3P16989 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.129e-8■■■□□ 16.2
YBX3P16989 XPO7-202ENST00000433566 4519 ntTSL 5 BASIC11.61□□□□□ -0.559e-8■■■□□ 16.2
YBX3P16989 BRD2-213ENST00000495733 3404 ntTSL 214.63□□□□□ -0.074e-10■■■□□ 16.2
YBX3P16989 SMC1A-203ENST00000428014 868 ntTSL 311.85□□□□□ -0.516e-9■■■□□ 16.1
YBX3P16989 BTF3-205ENST00000509708 515 ntTSL 56.86□□□□□ -1.316e-17■■■□□ 16.1
YBX3P16989 STXBP1-220ENST00000637521 2068 ntTSL 5 BASIC13.08□□□□□ -0.322e-6■■■□□ 16.1
YBX3P16989 TK1-206ENST00000592126 631 ntTSL 324.18■■□□□ 1.461e-7■■■□□ 16.1
YBX3P16989 TK1-205ENST00000590862 642 ntTSL 3 BASIC23.59■■□□□ 1.371e-7■■■□□ 16.1
YBX3P16989 TK1-202ENST00000586613 631 ntTSL 322.46■■□□□ 1.191e-7■■■□□ 16.1
YBX3P16989 TK1-204ENST00000590430 683 ntTSL 3 BASIC22.23■■□□□ 1.151e-7■■■□□ 16.1
YBX3P16989 RPLP2-206ENST00000530398 313 ntTSL 315.29■□□□□ 0.041e-43■■■□□ 16.1
YBX3P16989 AIMP2-204ENST00000415999 777 ntTSL 318.85■□□□□ 0.611e-13■■■□□ 16.1
YBX3P16989 PRMT7-227ENST00000569571 959 ntTSL 528.36■■■□□ 2.139e-7■■■□□ 16.1
YBX3P16989 PRMT7-217ENST00000565983 588 ntTSL 422.09■■□□□ 1.139e-7■■■□□ 16.1
YBX3P16989 PRMT7-220ENST00000566657 584 ntTSL 221.86■■□□□ 1.099e-7■■■□□ 16.1
YBX3P16989 PRMT7-212ENST00000564050 846 ntTSL 521.4■■□□□ 1.029e-7■■■□□ 16.1
YBX3P16989 PRMT7-205ENST00000562050 1005 ntTSL 321.39■■□□□ 1.019e-7■■■□□ 16.1
YBX3P16989 PRMT7-214ENST00000565356 1723 ntTSL 521.32■■□□□ 19e-7■■■□□ 16.1
YBX3P16989 PRMT7-215ENST00000565745 440 ntTSL 520.2■□□□□ 0.829e-7■■■□□ 16.1
YBX3P16989 PRMT7-206ENST00000562381 713 ntTSL 219.81■□□□□ 0.769e-7■■■□□ 16.1
YBX3P16989 PRMT7-226ENST00000569047 648 ntTSL 518.62■□□□□ 0.579e-7■■■□□ 16.1
YBX3P16989 PRMT7-209ENST00000563520 839 ntTSL 317.73■□□□□ 0.439e-7■■■□□ 16.1
YBX3P16989 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.63■□□□□ 0.259e-7■■■□□ 16.1
YBX3P16989 PRMT7-213ENST00000564441 1011 ntTSL 315.73■□□□□ 0.119e-7■■■□□ 16.1
YBX3P16989 PRMT7-218ENST00000566341 562 ntTSL 414.64□□□□□ -0.079e-7■■■□□ 16.1
YBX3P16989 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.089e-7■■■□□ 16.1
YBX3P16989 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC14.54□□□□□ -0.083e-8■■■□□ 16.1
YBX3P16989 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC14.05□□□□□ -0.163e-8■■■□□ 16.1
YBX3P16989 EIF4G1-221ENST00000441154 4311 ntTSL 5 BASIC11.98□□□□□ -0.493e-8■■■□□ 16.1
YBX3P16989 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.53■□□□□ 0.887e-68■■■□□ 16.1
YBX3P16989 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.887e-68■■■□□ 16.1
YBX3P16989 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.157e-68■■■□□ 16.1
YBX3P16989 LAPTM5-202ENST00000464569 953 ntTSL 523.62■■□□□ 1.371e-9■■■□□ 16.1
Retrieved 100 of 29,075 protein–RNA pairs in 391.5 ms