RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 AEBP2Q6ZN18 517 aaPredicted RBP28.85■■■□□ 2.21
SCFD1-210ENST00000553693 CHIC1Q5VXU3 224 aa26.81■■□□□ 1.88
SCFD1-210ENST00000553693 SENP3Q9H4L4 574 aaPredicted RBP24.61■■□□□ 1.53
SCFD1-210ENST00000553693 PHF23Q9BUL5 403 aaPredicted RBP24.23■■□□□ 1.47
SCFD1-210ENST00000553693 FOXD1Q16676 465 aa23.11■■□□□ 1.29
SCFD1-210ENST00000553693 POTEDQ86YR6 584 aa22.7■■□□□ 1.22
SCFD1-210ENST00000553693 MSH5O43196 834 aa21.83■■□□□ 1.09
SCFD1-210ENST00000553693 PIAS4Q8N2W9 510 aaPredicted RBP21.34■■□□□ 1.01
SCFD1-210ENST00000553693 PPP6R1Q9UPN7 881 aa21.06■□□□□ 0.96
SCFD1-210ENST00000553693 ADRA2BP18089 450 aa20.9■□□□□ 0.94
SCFD1-210ENST00000553693 PLPPR3Q6T4P5 718 aa20.83■□□□□ 0.93
SCFD1-210ENST00000553693 MAPK8IP2Q13387 824 aaPredicted RBP19.46■□□□□ 0.71
SCFD1-210ENST00000553693 DMRT2Q9Y5R5 561 aa19.43■□□□□ 0.7
SCFD1-210ENST00000553693 CACNB1Q02641 598 aaPredicted RBP19.21■□□□□ 0.67
SCFD1-210ENST00000553693 SCAF1Q9H7N4 1312 aaKnown RBP19■□□□□ 0.63
SCFD1-210ENST00000553693 RNF39Q9H2S5 420 aa18.62■□□□□ 0.57
SCFD1-210ENST00000553693 DCAF8L1A6NGE4 600 aa18.6■□□□□ 0.57
SCFD1-210ENST00000553693 HOXD11P31277 338 aaPredicted RBP18.43■□□□□ 0.54
SCFD1-210ENST00000553693 C1QBPQ07021 282 aaKnown RBP18.26■□□□□ 0.51
SCFD1-210ENST00000553693 PPP4R3CPQ6ZMV5 832 aa18.2■□□□□ 0.5
SCFD1-210ENST00000553693 RNF216Q9NWF9 866 aaPredicted RBP18.06■□□□□ 0.48
SCFD1-210ENST00000553693 CNKSR2Q8WXI2 1034 aa18.01■□□□□ 0.47
SCFD1-210ENST00000553693 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
SCFD1-210ENST00000553693 POTEHQ6S545 545 aa17.61■□□□□ 0.41
SCFD1-210ENST00000553693 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.48■□□□□ 0.392e-10■□□□□ 8.2
SCFD1-210ENST00000553693 DSG3P32926 999 aa17.18■□□□□ 0.34
SCFD1-210ENST00000553693 NCBP3Q53F19 620 aaKnown RBP17.18■□□□□ 0.34
SCFD1-210ENST00000553693 U3KPZ7 1027 aaPredicted RBP17.11■□□□□ 0.33
SCFD1-210ENST00000553693 SPINK5Q9NQ38 1064 aaPredicted RBP17.1■□□□□ 0.33
SCFD1-210ENST00000553693 NPM3O75607 178 aaKnown RBP17.04■□□□□ 0.32
SCFD1-210ENST00000553693 CAPN15O75808 1086 aa17.03■□□□□ 0.32
SCFD1-210ENST00000553693 ABCB7O75027 752 aa16.61■□□□□ 0.25
SCFD1-210ENST00000553693 KCNA4P22459 653 aa16.61■□□□□ 0.25
SCFD1-210ENST00000553693 TRHP20396 242 aaPredicted RBP16.58■□□□□ 0.24
SCFD1-210ENST00000553693 SLC4A2P04920 1241 aa16.51■□□□□ 0.23
SCFD1-210ENST00000553693 ZNF219Q9P2Y4 722 aaPredicted RBP16.5■□□□□ 0.23
SCFD1-210ENST00000553693 APLP2Q06481 763 aa16.39■□□□□ 0.21
SCFD1-210ENST00000553693 CHRDL2Q6WN34 429 aa16.33■□□□□ 0.2
SCFD1-210ENST00000553693 RBM42Q9BTD8 480 aaKnown RBP16.32■□□□□ 0.2
SCFD1-210ENST00000553693 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.23■□□□□ 0.19
SCFD1-210ENST00000553693 HNRNPUL2Q1KMD3 747 aaKnown RBP16.23■□□□□ 0.19
SCFD1-210ENST00000553693 SAMD1Q6SPF0 538 aaPredicted RBP16.13■□□□□ 0.17
SCFD1-210ENST00000553693 SP7Q8TDD2 431 aaPredicted RBP16.13■□□□□ 0.17
SCFD1-210ENST00000553693 POLA2Q14181 598 aa15.98■□□□□ 0.15
SCFD1-210ENST00000553693 AKT1S1Q96B36 256 aa15.82■□□□□ 0.12
SCFD1-210ENST00000553693 SLC4A1APQ9BWU0 796 aaKnown RBP15.82■□□□□ 0.12
SCFD1-210ENST00000553693 PIP4P2Q8N4L2 257 aa15.8■□□□□ 0.12
SCFD1-210ENST00000553693 MYCNP04198 464 aaPredicted RBP15.72■□□□□ 0.11
SCFD1-210ENST00000553693 REM2Q8IYK8 340 aaPredicted RBP15.71■□□□□ 0.11
SCFD1-210ENST00000553693 HAX1O00165 279 aa15.67■□□□□ 0.1
SCFD1-210ENST00000553693 FXR2P51116 673 aaKnown RBP eCLIP15.58■□□□□ 0.08
SCFD1-210ENST00000553693 PITPNM1O00562 1244 aa15.56■□□□□ 0.08
SCFD1-210ENST00000553693 EVX2Q03828 476 aa15.53■□□□□ 0.08
SCFD1-210ENST00000553693 ATF5Q9Y2D1 282 aaPredicted RBP15.52■□□□□ 0.08
SCFD1-210ENST00000553693 ZBTB12Q9Y330 459 aaPredicted RBP15.52■□□□□ 0.08
SCFD1-210ENST00000553693 OSCARQ8IYS5 282 aa15.51■□□□□ 0.07
SCFD1-210ENST00000553693 FOXD4L1Q9NU39 408 aa15.44■□□□□ 0.06
SCFD1-210ENST00000553693 ZBTB22O15209 634 aa15.25■□□□□ 0.03
SCFD1-210ENST00000553693 PRKAR2AP13861 404 aaKnown RBP15.12■□□□□ 0.01
SCFD1-210ENST00000553693 LHX8Q68G74 356 aa15.12■□□□□ 0.01
SCFD1-210ENST00000553693 C19orf67A6NJJ6 358 aa15.11■□□□□ 0.01
SCFD1-210ENST00000553693 GABBR2O75899 941 aa15.07■□□□□ 0
SCFD1-210ENST00000553693 SPDYE2BA6NHP3 402 aa15.03■□□□□ -0
SCFD1-210ENST00000553693 SPDYE6P0CI01 402 aa15.03■□□□□ -0
SCFD1-210ENST00000553693 SPDYE2Q495Y8 402 aa15.03■□□□□ -0
SCFD1-210ENST00000553693 EHMT2Q96KQ7 1210 aa15□□□□□ -0.01
SCFD1-210ENST00000553693 CLEC11AQ9Y240 323 aa14.96□□□□□ -0.01
SCFD1-210ENST00000553693 ATXN8OSP0DMR3 200 aa14.95□□□□□ -0.02
SCFD1-210ENST00000553693 SPDYE1Q8NFV5 336 aaPredicted RBP14.94□□□□□ -0.02
SCFD1-210ENST00000553693 CSRNP3Q8WYN3 585 aa14.94□□□□□ -0.02
SCFD1-210ENST00000553693 CHADLQ6NUI6 762 aa14.82□□□□□ -0.04
SCFD1-210ENST00000553693 POTEIP0CG38 1075 aa14.81□□□□□ -0.04
SCFD1-210ENST00000553693 FBLN2P98095 1184 aa14.81□□□□□ -0.04
SCFD1-210ENST00000553693 SSUH2Q9Y2M2 353 aa14.8□□□□□ -0.04
SCFD1-210ENST00000553693 MKRN4PQ13434 485 aaPredicted RBP14.76□□□□□ -0.05
SCFD1-210ENST00000553693 PLSCR2Q9NRY7 297 aa14.75□□□□□ -0.05
SCFD1-210ENST00000553693 ZNF692Q9BU19 519 aaPredicted RBP14.71□□□□□ -0.05
SCFD1-210ENST00000553693 PRR29P0C7W0 189 aa14.59□□□□□ -0.07
SCFD1-210ENST00000553693 CD44P16070 742 aaKnown RBP14.58□□□□□ -0.08
SCFD1-210ENST00000553693 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
SCFD1-210ENST00000553693 FARP1Q9Y4F1 1045 aaPredicted RBP14.49□□□□□ -0.09
SCFD1-210ENST00000553693 CLCN6P51797 869 aa14.48□□□□□ -0.09
SCFD1-210ENST00000553693 DCBLD2Q96PD2 775 aa14.43□□□□□ -0.1
SCFD1-210ENST00000553693 OTUD5Q96G74 571 aa14.38□□□□□ -0.11
SCFD1-210ENST00000553693 ZNF579Q8NAF0 562 aaKnown RBP14.35□□□□□ -0.11
SCFD1-210ENST00000553693 POTEB2H3BUK9 544 aa14.31□□□□□ -0.12
SCFD1-210ENST00000553693 POTEMA6NI47 508 aa14.28□□□□□ -0.12
SCFD1-210ENST00000553693 GALR2O43603 387 aaPredicted RBP14.25□□□□□ -0.13
SCFD1-210ENST00000553693 ZRANB1Q9UGI0 708 aa14.25□□□□□ -0.13
SCFD1-210ENST00000553693 POTEGQ6S5H5 508 aa14.21□□□□□ -0.13
SCFD1-210ENST00000553693 CREBZFQ9NS37 354 aa14.13□□□□□ -0.15
SCFD1-210ENST00000553693 PELP1Q8IZL8 1130 aaKnown RBP14.08□□□□□ -0.16
SCFD1-210ENST00000553693 PHF12Q96QT6 1004 aa14.03□□□□□ -0.16
SCFD1-210ENST00000553693 PCDH10Q9P2E7 1040 aa14.03□□□□□ -0.16
SCFD1-210ENST00000553693 POTEJP0CG39 1038 aa13.99□□□□□ -0.17
SCFD1-210ENST00000553693 LCE2DQ5TA82 110 aaPredicted RBP13.97□□□□□ -0.17
SCFD1-210ENST00000553693 METRNQ9UJH8 293 aa13.9□□□□□ -0.18
SCFD1-210ENST00000553693 PAK3O75914 559 aaPredicted RBP13.89□□□□□ -0.19
SCFD1-210ENST00000553693 ASTLQ6HA08 431 aaPredicted RBP13.89□□□□□ -0.19
SCFD1-210ENST00000553693 STAG3Q9UJ98 1225 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 108.4 ms