Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.81■□□□□ 0.76
TNFP01375 AC079834.2-201ENST00000609776 1949 ntBASIC19.81■□□□□ 0.76
TNFP01375 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
TNFP01375 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TNFP01375 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.81■□□□□ 0.76
TNFP01375 AC008550.1-201ENST00000511500 884 ntBASIC19.81■□□□□ 0.76
TNFP01375 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
TNFP01375 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.81■□□□□ 0.76
TNFP01375 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 MTDHP1-201ENST00000605323 784 ntBASIC19.81■□□□□ 0.76
TNFP01375 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.81■□□□□ 0.76
TNFP01375 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
TNFP01375 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TNFP01375 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.8■□□□□ 0.76
TNFP01375 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
TNFP01375 LINC00565-201ENST00000562710 2331 ntBASIC19.8■□□□□ 0.76
TNFP01375 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.8■□□□□ 0.76
TNFP01375 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC19.8■□□□□ 0.76
TNFP01375 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.8■□□□□ 0.76
TNFP01375 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.8■□□□□ 0.76
TNFP01375 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.8■□□□□ 0.76
TNFP01375 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.8■□□□□ 0.76
TNFP01375 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
TNFP01375 PLK5-205ENST00000642079 1969 ntBASIC19.8■□□□□ 0.76
TNFP01375 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.8■□□□□ 0.76
TNFP01375 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TNFP01375 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFP01375 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFP01375 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.79■□□□□ 0.76
TNFP01375 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
TNFP01375 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
TNFP01375 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 AL023875.1-201ENST00000640777 796 ntBASIC19.79■□□□□ 0.76
TNFP01375 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
TNFP01375 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.79■□□□□ 0.76
TNFP01375 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TNFP01375 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.79■□□□□ 0.76
TNFP01375 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
TNFP01375 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFP01375 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 AF106564.1-201ENST00000607058 2553 ntBASIC19.78■□□□□ 0.76
TNFP01375 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.78■□□□□ 0.76
TNFP01375 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 MIR718-201ENST00000390190 70 ntBASIC19.78■□□□□ 0.76
TNFP01375 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFP01375 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.78■□□□□ 0.76
TNFP01375 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
TNFP01375 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
TNFP01375 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFP01375 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
TNFP01375 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.78■□□□□ 0.76
TNFP01375 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TNFP01375 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
TNFP01375 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TNFP01375 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TNFP01375 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
TNFP01375 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.77■□□□□ 0.76
TNFP01375 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.77■□□□□ 0.76
TNFP01375 PRKY-204ENST00000533551 1019 ntBASIC19.77■□□□□ 0.76
TNFP01375 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.77■□□□□ 0.76
TNFP01375 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.77■□□□□ 0.76
TNFP01375 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TNFP01375 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
TNFP01375 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC19.77■□□□□ 0.76
TNFP01375 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
TNFP01375 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms