Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 DUX4L16-201ENST00000555130 1264 ntBASIC19.56■□□□□ 0.72
CLDN9O95484 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.56■□□□□ 0.72
CLDN9O95484 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.56■□□□□ 0.72
CLDN9O95484 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 MIR5787-201ENST00000611784 55 ntBASIC19.56■□□□□ 0.72
CLDN9O95484 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CLDN9O95484 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CLDN9O95484 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.56■□□□□ 0.72
CLDN9O95484 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLDN9O95484 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN9O95484 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.55■□□□□ 0.72
CLDN9O95484 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.55■□□□□ 0.72
CLDN9O95484 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
CLDN9O95484 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.55■□□□□ 0.72
CLDN9O95484 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN9O95484 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.55■□□□□ 0.72
CLDN9O95484 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.55■□□□□ 0.72
CLDN9O95484 AC011767.1-201ENST00000617410 1153 ntBASIC19.55■□□□□ 0.72
CLDN9O95484 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN9O95484 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN9O95484 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CLDN9O95484 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.55■□□□□ 0.72
CLDN9O95484 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
CLDN9O95484 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
CLDN9O95484 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLDN9O95484 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC19.54■□□□□ 0.72
CLDN9O95484 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN9O95484 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN9O95484 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
CLDN9O95484 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.54■□□□□ 0.72
CLDN9O95484 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CLDN9O95484 CNN2P6-201ENST00000439038 900 ntBASIC19.54■□□□□ 0.72
CLDN9O95484 AL162430.1-201ENST00000480705 870 ntBASIC19.54■□□□□ 0.72
CLDN9O95484 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.54■□□□□ 0.72
CLDN9O95484 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.54■□□□□ 0.72
CLDN9O95484 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.54■□□□□ 0.72
CLDN9O95484 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLDN9O95484 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 TCF3P1-201ENST00000423021 1937 ntBASIC19.53■□□□□ 0.72
CLDN9O95484 AC068338.2-201ENST00000563278 1430 ntBASIC19.53■□□□□ 0.72
CLDN9O95484 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.53■□□□□ 0.72
CLDN9O95484 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.53■□□□□ 0.72
CLDN9O95484 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
CLDN9O95484 RARRES2P4-201ENST00000514074 484 ntBASIC19.53■□□□□ 0.72
CLDN9O95484 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.53■□□□□ 0.72
CLDN9O95484 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.53■□□□□ 0.72
CLDN9O95484 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CLDN9O95484 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.52■□□□□ 0.72
CLDN9O95484 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CLDN9O95484 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLDN9O95484 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.52■□□□□ 0.72
CLDN9O95484 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.52■□□□□ 0.72
CLDN9O95484 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.52■□□□□ 0.72
CLDN9O95484 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.52■□□□□ 0.72
CLDN9O95484 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
CLDN9O95484 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.52■□□□□ 0.72
CLDN9O95484 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
CLDN9O95484 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.52■□□□□ 0.72
CLDN9O95484 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CLDN9O95484 BID-214ENST00000617586 542 ntTSL 5 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms