Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TRAV3A0A0B4J244 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 LBX2-AS1-202ENST00000603175 2083 ntBASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 KRT19P1-201ENST00000405746 1186 ntBASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 CD44-222ENST00000526025 1052 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TRAV3A0A0B4J244 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 GUK1-205ENST00000366722 850 ntTSL 3 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TRAV3A0A0B4J244 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 SAPCD2P1-201ENST00000395413 1184 ntBASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 AL158211.5-201ENST00000623583 2518 ntBASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 AL691432.2-201ENST00000607222 2038 ntBASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
TRAV3A0A0B4J244 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 VMO1-204ENST00000441199 741 ntTSL 2 BASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 CDV3P1-201ENST00000471403 739 ntBASIC16.23■□□□□ 0.19
TRAV3A0A0B4J244 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms