Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VPS28Q9UK41 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS28Q9UK41 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS28Q9UK41 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS28Q9UK41 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS28Q9UK41 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
VPS28Q9UK41 LINC01521-201ENST00000504184 1943 ntBASIC20.83■□□□□ 0.93
VPS28Q9UK41 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.83■□□□□ 0.93
VPS28Q9UK41 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS28Q9UK41 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
VPS28Q9UK41 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS28Q9UK41 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS28Q9UK41 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS28Q9UK41 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS28Q9UK41 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS28Q9UK41 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS28Q9UK41 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 MIR2861-201ENST00000636310 90 ntBASIC20.82■□□□□ 0.92
VPS28Q9UK41 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS28Q9UK41 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS28Q9UK41 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 C2orf69P4-201ENST00000565394 541 ntBASIC20.81■□□□□ 0.92
VPS28Q9UK41 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
VPS28Q9UK41 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS28Q9UK41 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 INO80E-214ENST00000620599 515 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS28Q9UK41 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS28Q9UK41 AC006128.1-201ENST00000624704 1661 ntBASIC20.8■□□□□ 0.92
VPS28Q9UK41 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VPS28Q9UK41 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VPS28Q9UK41 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms