Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 AC087633.2-202ENST00000565166 1439 ntBASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
VPS29Q9UBQ0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 AC006015.1-201ENST00000429970 570 ntBASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 AC016405.3-201ENST00000607710 860 ntBASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 AL356652.1-201ENST00000615962 565 ntBASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 CYP21A1P-202ENST00000354927 1481 ntBASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
VPS29Q9UBQ0 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 DPP3P2-201ENST00000416030 1696 ntBASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 DUX4L16-201ENST00000555130 1264 ntBASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 MIR5787-201ENST00000611784 55 ntBASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.4■□□□□ 0.7
VPS29Q9UBQ0 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.39■□□□□ 0.7
VPS29Q9UBQ0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
VPS29Q9UBQ0 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 AL162430.1-201ENST00000480705 870 ntBASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 AC011767.1-201ENST00000617410 1153 ntBASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
VPS29Q9UBQ0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms