Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
DDX4Q9NQI0 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
DDX4Q9NQI0 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC24.08■■□□□ 1.44
DDX4Q9NQI0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
DDX4Q9NQI0 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.44
DDX4Q9NQI0 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 RPS2P55-201ENST00000397318 883 ntBASIC24.07■■□□□ 1.44
DDX4Q9NQI0 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 AC107956.1-201ENST00000494359 873 ntBASIC24.07■■□□□ 1.44
DDX4Q9NQI0 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 AC233702.5-201ENST00000584107 538 ntBASIC24.07■■□□□ 1.44
DDX4Q9NQI0 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 AF106564.1-201ENST00000607058 2553 ntBASIC24.07■■□□□ 1.44
DDX4Q9NQI0 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
DDX4Q9NQI0 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 AC012618.2-201ENST00000428058 849 ntBASIC24.06■■□□□ 1.44
DDX4Q9NQI0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 AC110285.5-201ENST00000611501 352 ntBASIC24.06■■□□□ 1.44
DDX4Q9NQI0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC24.06■■□□□ 1.44
DDX4Q9NQI0 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
DDX4Q9NQI0 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
DDX4Q9NQI0 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 TSPY7P-201ENST00000431358 1114 ntBASIC24.03■■□□□ 1.44
DDX4Q9NQI0 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 AC023632.3-201ENST00000521633 145 ntBASIC24.03■■□□□ 1.44
DDX4Q9NQI0 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 PLK5-205ENST00000642079 1969 ntBASIC24.03■■□□□ 1.44
DDX4Q9NQI0 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
DDX4Q9NQI0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 AL121603.2-201ENST00000557373 2117 ntBASIC24.02■■□□□ 1.44
DDX4Q9NQI0 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 Six3os1_6.1-201ENST00000620790 196 ntBASIC24.02■■□□□ 1.44
DDX4Q9NQI0 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
DDX4Q9NQI0 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
DDX4Q9NQI0 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
DDX4Q9NQI0 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC24.01■■□□□ 1.43
DDX4Q9NQI0 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
DDX4Q9NQI0 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms