Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VMP1Q96GC9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.34■□□□□ 0.69
VMP1Q96GC9 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
VMP1Q96GC9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VMP1Q96GC9 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VMP1Q96GC9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
VMP1Q96GC9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VMP1Q96GC9 GPX1P1-201ENST00000388829 606 ntBASIC19.33■□□□□ 0.68
VMP1Q96GC9 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.33■□□□□ 0.68
VMP1Q96GC9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.33■□□□□ 0.68
VMP1Q96GC9 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.33■□□□□ 0.68
VMP1Q96GC9 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VMP1Q96GC9 AC069236.1-201ENST00000604339 616 ntBASIC19.33■□□□□ 0.68
VMP1Q96GC9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.33■□□□□ 0.68
VMP1Q96GC9 AC008694.1-202ENST00000636953 945 ntBASIC19.33■□□□□ 0.68
VMP1Q96GC9 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
VMP1Q96GC9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VMP1Q96GC9 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VMP1Q96GC9 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VMP1Q96GC9 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 HLA-L-209ENST00000420110 1011 ntBASIC19.32■□□□□ 0.68
VMP1Q96GC9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 AC091799.1-201ENST00000422823 811 ntBASIC19.32■□□□□ 0.68
VMP1Q96GC9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 AC133552.2-202ENST00000575694 574 ntBASIC19.32■□□□□ 0.68
VMP1Q96GC9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.32■□□□□ 0.68
VMP1Q96GC9 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
VMP1Q96GC9 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.32■□□□□ 0.68
VMP1Q96GC9 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 OR10C1-204ENST00000622521 1039 ntBASIC19.31■□□□□ 0.68
VMP1Q96GC9 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VMP1Q96GC9 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.31■□□□□ 0.68
VMP1Q96GC9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 CDV3P1-201ENST00000471403 739 ntBASIC19.3■□□□□ 0.68
VMP1Q96GC9 AC083906.2-201ENST00000511578 360 ntBASIC19.3■□□□□ 0.68
VMP1Q96GC9 AF201337.1-201ENST00000520239 748 ntBASIC19.3■□□□□ 0.68
VMP1Q96GC9 AL109923.1-201ENST00000618799 583 ntBASIC19.3■□□□□ 0.68
VMP1Q96GC9 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VMP1Q96GC9 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.3■□□□□ 0.68
VMP1Q96GC9 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
VMP1Q96GC9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VMP1Q96GC9 AL020996.1-203ENST00000536896 2307 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms