Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.69■□□□□ 0.58
ZNF540Q8NDQ6 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 AL354811.1-201ENST00000610286 706 ntBASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 AIRN-201ENST00000601203 4374 ntBASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
ZNF540Q8NDQ6 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 MIR572-201ENST00000384983 95 ntBASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 AC010525.1-201ENST00000585559 441 ntBASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 AL158211.5-201ENST00000623583 2518 ntBASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
ZNF540Q8NDQ6 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
ZNF540Q8NDQ6 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 AC123595.1-201ENST00000440769 1046 ntBASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 TNXA-203ENST00000507684 2038 ntBASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 AC004408.2-201ENST00000623613 2777 ntBASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
ZNF540Q8NDQ6 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
ZNF540Q8NDQ6 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
ZNF540Q8NDQ6 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 AC092720.2-201ENST00000602388 1665 ntBASIC18.64■□□□□ 0.57
ZNF540Q8NDQ6 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms